Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq15 86.0 6e-12 >seq15 Length=109054052 Score = 86.0 bits (94), Expect = 6e-12 Identities = 200/300 (67%), Gaps = 4/300 (1%) Strand=Plus/Minus Query 11308 CATCTAAACATTTAACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGAG 11367 |||| ||| || |||||||| |||| |||||| | |||| |||| | || | Sbjct 46625661 CATCCAAAACTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTG 46625602 Query 11368 CCACCCGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTC 11427 | | | || || |||| | | ||| | | ||| ||| ||||| |||| ||| | Sbjct 46625601 CAATTCTGTCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACAC 46625542 Query 11428 CAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATA 11487 ||| || || |||||||||||||||||||| || |||| | ||||||| || | | Sbjct 46625541 CAACATTTCCTCTATAATCTTCATCTATAACACCAGCTCCCACATCTATGAAGTATTTTG 46625482 Query 11488 ACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAtttttttGGAATAGATAAACTTA 11547 | | ||||| | ||| ||||||| |||||| ||| |||| || || | Sbjct 46625481 CAGCCAAGCCAGAACGTGGAGCTATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAA 46625422 Query 11548 TATCAGTTTTAACTAAAATTCTTTCT--TTTGATTTAACGATATAATCATAAGCACTATA 11605 | || ||||| || || |||||| | | | ||| |||||||||||||||| || Sbjct 46625421 TGTCCGTTTTCAC--AATGGCTTTCTCCATAGGTGGTACGGTATAATCATAAGCACTGTA 46625364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479708565019400