Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq15 93.3 4e-14 >seq15 Length=109054052 Score = 93.3 bits (102), Expect = 4e-14 Identities = 225/339 (66%), Gaps = 4/339 (1%) Strand=Plus/Minus Query 11083 TCCCACTTGAACCAAATCCATTATTATCTCTATTTGTACCATCTAAACATTTAACTTCTT 11142 ||||| | |||||||| || | |||| | || |||| ||| || |||||||| Sbjct 46625700 TCCCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTT 46625641 Query 11143 TAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGTGCCACTCGATCGCCTCTTTTAA 11202 |||| |||||| | |||| |||| | ||||| | || || || |||| | Sbjct 46625640 CTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGA 46625581 Query 11203 TATTAAATGTATTTTTACTATTATTAATAAATATAACTCCAATGTTACCCCTATAATCTT 11262 | ||| | | ||| | | ||||| |||| ||| |||| || || |||||||||| Sbjct 46625580 CTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTT 46625521 Query 11263 CATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAAAGACCAGACCTTGGCG 11322 |||||||||| || |||| | ||||||| || | | | | ||||| | ||| | Sbjct 46625520 CATCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAG 46625461 Query 11323 CTATTCGTCCATAACAtttttttGGAATAGATAAACTTATATCAGTTTTAACTAAAATTC 11382 |||||| |||||| ||| |||| || || || || ||||| || || | Sbjct 46625460 CTATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCAC--AATGGC 46625403 Query 11383 TTTCT--TTTGATTTAACGATATAATCATAAGCACTATA 11419 ||||| | | | ||| |||||||||||||||| || Sbjct 46625402 TTTCTCCATAGGTGGTACGGTATAATCATAAGCACTGTA 46625364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478569411171240