Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq15 111 2e-19 seq1 107 3e-18 >seq15 Length=109054052 Score = 111 bits (122), Expect = 2e-19 Identities = 239/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 39799 CCAGTTGATCCAAATCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCTTCC 39858 ||||| || ||||| ||| || ||||| || || ||| | | ||| |||||||| Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 39859 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTACA 39918 | |||||||||| | || |||| | | || ||||| || ||||| || ||| | || || Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 39919 TTGAAAGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTTCG 39978 | || | ||| ||| ||||| | | || || | ||||| ||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 39979 TCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGCT 40035 ||||| ||||| |||| | ||| || |||| | || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 40036 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACTGTCTT 40095 ||||| |||||||| ||| | | || ||| || || || | | || ||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA--CAATGGCTT 46625401 Query 40096 TCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGGC 40148 ||||| || || | |||||||| ||||| || |||| || || || ||||| Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq1 Length=194850757 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| |||||||| |||||||||||||| | || ||||| |||| | || Sbjct 145038468 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACGCTGT 145038409 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| || Sbjct 145038408 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCAAGGC 145038349 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 145038348 TCCAGGTAAATAGC 145038335 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| || || ||||| ||||| || || || || || |||||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | || | Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 145048956 CTGTTTCTTATACCAT 145048941 Score = 100 bits (110), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| || | | | |||||| ||||| || || || || ||||||| Sbjct 145043056 CATAGGTTTCATATGGGCCATGCTCCTTGGCTAGGTCACAGCTGGCTTCCAAGGCTCCAT 145042997 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | |||||| | ||| || || || || ||||| |||| Sbjct 145042996 AATAAATAGTTTCAAAGATTTGCTTATTCAACAATTGGGCCTCTGGACTCTCAAAAGGAT 145042937 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | |||||||| || ||||| | ||||| || ||||| || || || | || | Sbjct 145042936 ATCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACTCCAATTCCAATGGGACGATGGC 145042877 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 145042876 GTTTATTTGA 145042867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671112010473160