Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq107 159 5e-34 >seq107 Length=1146635 Score = 159 bits (176), Expect = 5e-34 Identities = 477/731 (65%), Gaps = 5/731 (1%) Strand=Plus/Plus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAGGGCGTCATCGAGGAGCTCTTGTGGATG 69955 |||||| |||| ||||| ||| || ||||| ||| | |||||| | ||||| | Sbjct 528872 CCTCTGCTGACAACCAAACGTGTATTCTGGAAGGGTGTCTTGGAGGAGTTGCTGTGGTTT 528931 Query 69956 ATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGAAAGGGTGTACACATTTGGAGCGGC 70015 || ||||| || ||||| ||||| ||| ||||| || | || ||| | | Sbjct 528932 ATCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGAAAATCTGGGATGCC 528991 Query 70016 AACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTG 70075 || ||| | ||||||| || || ||| || ||||||||| || || ||| Sbjct 528992 AATGCATCCCGAGACTTTTTGGACAGACTGGGATTCTCCACCAGACAAGAAGGGGACCTG 529051 Query 70076 GGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGACA 70135 || ||||| || || |||||||||||||| | || | | || ||| || || Sbjct 529052 GGTCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGTGCAGAATACAAAGATAAGGACTCA 529111 Query 70136 GACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTGACACTCTCAAGACCAAT 70195 || ||||| ||||| || || || ||| |||||| | | || || || |||| ||||| Sbjct 529112 GATTATTCAGGTCAAGGAGTAGACCAACTGCAGAAAGTGATCGATACCATCAAAACCAAC 529171 Query 70196 CCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCA 70255 || || || || ||| | ||||| | || ||||| ||| | | | ||||| Sbjct 529172 CCTGATGACAGAAGAATCATCATGTGTGCCTGAAATCCCAAAGACCTTCCTCTGATGGCG 529231 Query 70256 CTACCACCGTGTCACTGT--TTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGCT 70313 || || || || || || | || ||||| ||| | |||| | |||| ||| Sbjct 529232 CTGCCCCCATGCCA-TGCCCTCTGC-CAGTTCTACGTGGTGAATGGGGAGCTGTCCTGCC 529289 Query 70314 TAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATT 70373 |||| || ||| | |||||| |||| || || ||||| ||||| || |||||| Sbjct 529290 AGCTGTACCAAAGGTCGGGAGACATGAGCCTGGGCGTGCCCTTCAACATCGCCAGCTATG 529349 Query 70374 CTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTACACA 70433 | || | || ||||||| | || | ||||||||||| | || || ||||| | Sbjct 529350 CCTTGCTCACCTACATGATCGTGCATGTCACCGGCCTGAAGCCAGGTGATTTTGTACATA 529409 Query 70434 CCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCGAAC 70493 | | || || || || | || | || ||||| ||||| | || || || | | Sbjct 529410 CTTTGGGAGATGCCCATATTTACCTGAACCACATTGAGCCTCTGAAAACTCAGCTTCAGC 529469 Query 70494 GGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGACAGTT 70553 | || || |||||||| || ||||| | | ||| |||||||| | ||||| || Sbjct 529470 GAGAACCAAGACCTTTCCCGAAGCT-CAAAATCTTCGAAAAGTTGAGACGATTGATGATT 529528 Query 70554 TTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCATGGTTC 70613 | || ||||||||| || ||||| ||| | ||| | || | ||| |||| Sbjct 529529 TCAAAGCTGAAGATTTTCAGATGAAAGGGTACAACCCACATCCAACTATTAAAATGGAGA 529588 Query 70614 TGGCTGTTTAG 70624 ||||||||||| Sbjct 529589 TGGCTGTTTAG 529599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741029177839160