Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 105 6e-18 seq72 86.0 5e-12 >seq3 Length=155691105 Score = 105 bits (116), Expect = 6e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || ||||| || ||||| || || || ||||| || |||| || | Sbjct 117739708 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCT 117739767 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || ||||| || || || ||||| || || ||||| | Sbjct 117739768 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAGG 117739827 Query 13293 CTATCAACCTTTCACC 13308 | | || |||||| || Sbjct 117739828 CCACCACCCTTTCCCC 117739843 >seq72 Length=2148096 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/206 (71%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGT--TTGTTTTTCCTTCTAACGAAATATTTT 12920 ||||| || ||||| ||| |||||||| ||||||| |||||||| |||| |||| Sbjct 1143865 TGATACTCTGAAACTCGTTTCTCAAAAAAAAAATTGTTTTCCCTTCTAA--AAATGTTTT 1143922 Query 12921 CCATAAAATCGAAAGGATTTT-TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 |||||||||| || ||| ||| | | | | ||| | | || | ||| | || Sbjct 1143923 CCATAAAATCAAAGGGAATTTATGGCTGGAAACCCTTTGAGA-ATCCAAGTTCCATGAAT 1143981 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| ||||| ||||||| ||| || |||||| | || | Sbjct 1143982 AATCTGTCAGCTACAAACTCAGTGTACCGTTTCATCAAAATGCAATTCATTTCAATGAGG 1144041 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || | ||| ||| ||||||||| Sbjct 1144042 CCAACTGACATGACTT-TGTTAAAAA 1144066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430965376329882