Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq7 176 1e-38 seq13 167 5e-36 seq19 138 3e-27 seq15 134 3e-26 seq112 127 5e-24 seq9 127 5e-24 seq110 118 2e-21 seq12 118 2e-21 seq4 113 1e-19 seq17 111 4e-19 seq3 111 4e-19 seq11 98.7 2e-15 seq1615 86.0 1e-11 >seq7 Length=173684459 Score = 176 bits (194), Expect = 1e-38 Identities = 158/197 (80%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || |||||||||| ||| | || ||||| ||||| || ||| Sbjct 2561123 GTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCATCTTCCAGTTGCTTGCCA 2561182 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || || || ||||||||||| |||||||| |||||||| || || |||||| Sbjct 2561183 GCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTT 2561242 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| ||||| ||||| ||||| || || || ||||| || ||||| ||| Sbjct 2561243 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGGTCTT-CCCGTAAGGGTT 2561301 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2561302 TTCACGAAGATCTGCAT 2561318 >seq13 Length=143360832 Score = 167 bits (184), Expect = 5e-36 Identities = 155/197 (79%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || |||||||||| ||| | || ||||| ||||| || ||| Sbjct 88039074 GTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGCCA 88039015 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || || || ||||||||||| |||||||| |||||||| || ||||||||| Sbjct 88039014 GCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTTGCTTTT 88038955 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||||| ||||| ||||| |||| || | || ||||| || |||| ||| Sbjct 88038954 ACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATGATGGTCTTCCCCATAAGGGTT 88038895 Query 104543 TTTACAAATATCTGCAT 104559 || | || |||||||| Sbjct 88038894 TTCATGAAGATCTGCAT 88038878 >seq19 Length=57279966 Score = 138 bits (152), Expect = 3e-27 Identities = 146/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || |||||||||| ||| || ||||| ||||| || |||||||| Sbjct 43334528 TCCTTTTGAATGTTGTAGTCAGATAAAGTCTGTCCATCTTCCAGTTGCTTGCCAGCAAAG 43334469 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || || || ||||||||||| |||||||| |||||||| || || || ||| ||||| Sbjct 43334468 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCCTTTGCATTT 43334409 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 |||| |||||| ||||| |||| |||| || || || || ||| |||||||| Sbjct 43334408 TCTATTGTATCG-AGGGTTCAACCTTGAGTGCGATGGTGTTCCCCATAAAGGTTTTTACG 43334350 Query 104549 AATATCTGCAT 104559 || ||||| || Sbjct 43334349 AAGATCTGTAT 43334339 >seq15 Length=109054052 Score = 134 bits (148), Expect = 3e-26 Identities = 252/372 (68%), Gaps = 9/372 (2%) Strand=Plus/Minus Query 65640 CCAGTAGAACCAAAACCACAGGACCCTCTTTCTGTTATATCTATAGCATCTACAGAAAGA 65699 ||||||||||||||||| | | |||||||| || ||| | | | | || Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTT---------GA 46625648 Query 65700 GCCTCCCTTATTTCTGGTTGTGCTATTTTTTCAAATATGATTTGAGCTACTCTATCGCCT 65759 | || ||||||||| | || |||| | |||| || || | ||| || || Sbjct 46625647 ACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCC 46625588 Query 65760 TTACATATATTAAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTA 65819 || | | ||||| || || || |||||||| | || | |||||||| |||||| Sbjct 46625587 TTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTA 46625528 Query 65820 TAGTCTGAATCTATAACACCAGCACCTACATCTATAAAGTAATTATACGCTAATCCAGAT 65879 || ||| ||||||||||||||| || |||||||| ||||| || || || ||||| Sbjct 46625527 TAATCTTCATCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAA 46625468 Query 65880 CGGGGAGCTATTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACC 65939 || ||||||||||| ||||| |||| ||||| | ||| | || || || Sbjct 46625467 CGTGGAGCTATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCACA 46625408 Query 65940 AATTCTTTGTCCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCA 65999 | |||| ||||| ||| ||||||||||||| || || || || || || || || || Sbjct 46625407 ATGGCTTTCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCG 46625348 Query 66000 GCCCACTGAGAC 66011 |||| | |||| Sbjct 46625347 GCCCGCGCAGAC 46625336 >seq112 Length=1107004 Score = 127 bits (140), Expect = 5e-24 Identities = 131/170 (77%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||| | || |||||||||| ||| | || |||| | ||| || |||||||| Sbjct 705485 TCCTTTTGAGTGTTGTAGTCAGATAAAGTCCATCCACCTTCCAATTGCTTGCCAGCAAAG 705544 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || || || || ||||||| ||| |||||||| |||||||| ||||| || ||||||||| Sbjct 705545 ATCAGTCTTTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTT 705604 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 ||| ||||| | ||||||||||| ||| | || ||||| || |||| Sbjct 705605 TCTTTTGTATCAAT-GGTTCTACCTCAAGTATGATGGTCTTCCCCATAAG 705653 >seq9 Length=116251907 Score = 127 bits (140), Expect = 5e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| || ||||||||| |||||| || ||||| ||| || ||||||||| Sbjct 47674486 TCCTTTTGAATGTTGTAGTCAGATGCAGTTCTTCCATCTTCCCATTGCTTGCCAGCAAAA 47674545 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | || ||||||||||| ||||| || ||||| || |||| | ||||||||| Sbjct 47674546 ATCAATATTTGCTGATCAGGAGGAATTCCATCCTTATCTTGGATCTCAACCTTTACATTT 47674605 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 ||| ||||| ||||| | || |||| || ||||| || |||| ||||||| Sbjct 47674606 TCTTTTGTATCCGAGGGTTCAAGTTCAAGTGAGATGGTCTTCCCCGTAACAGTTTTTATG 47674665 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 47674666 AAAATCTGCATCTTG 47674680 >seq110 Length=1165285 Score = 118 bits (130), Expect = 2e-21 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428 || || ||||| | || |||||| |||||| || ||||| |||| || |||||||| Sbjct 970088 TCCTTTTGAATGCTGTAATCAGATGCAGTTCTTCCATCTTCCCGTTGCTTGCCAGCAAAG 970147 Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTT 104488 || | | || ||||||||||| ||||| || |||| || |||| | ||||||||| Sbjct 970148 ATCAATATTTGCTGATCAGGAGGAATTCCATCCGTATCTTGGATCTCAACCTTTACATTT 970207 Query 104489 TCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACA 104548 ||| ||||| ||||| | ||| |||| || ||||| || |||| ||||||| Sbjct 970208 TCTTTTGTATCCGAGGGTTCAAGCTCAAGTGAGATGGTCTTCCCCGTAATGGTTTTTATG 970267 Query 104549 AATATCTGCATTTTG 104563 || |||||||| ||| Sbjct 970268 AAAATCTGCATCTTG 970282 >seq12 Length=155355395 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||| | | | ||||||||| | ||||| | || || | || || ||| Sbjct 66863387 GCTTTATGGTGGTACTTTGTATCTAAAGGAGTTGAATATTTGGACACAGTGTTTTTTATC 66863328 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || || |||||| |||||| || ||| || |||||||| || || | ||| |||||| Sbjct 66863327 CTTCGGAAGAAAAACAATCAAGTTTCTTTCCTTCATGTATACCACCACTGTACCATGTTT 66863268 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 || ||| | ||||| || ||||||||| | ||||| ||||||| Sbjct 66863267 ACATTGTGGTGGATTGGGATTAAATGGGTTGCAGGGGGACAAG 66863225 >seq4 Length=91394100 Score = 113 bits (124), Expect = 1e-19 Identities = 123/162 (76%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 |||||||| ||||| || | |||||| || || | ||| |||| | ||| |||||||| Sbjct 78197580 CCGTCTTCCAGTTGCTTGC-AGCAAAGATCAGTCCCTGCTGATTACAAGGAATTCCTTCC 78197522 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 |||||||| ||||| || || || |||||| ||||| ||||| ||||| || || Sbjct 78197521 TTATCCTGGATCTTGGCCTTCACGTTTTCTGTCGTATCTGAGGGTTCAACCTCAAGGGTG 78197462 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| | ||||| ||||||||||| ||||| || ||| Sbjct 78197461 ATGATCTTCTCTGTAAGGGTTTTTACAAAGATCTGTATCTTG 78197420 >seq17 Length=85008467 Score = 111 bits (122), Expect = 4e-19 Identities = 119/156 (76%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 104375 TGAATATTATAGTCAGATAGAGTTCTA-CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAG 104433 ||||| || |||||||||||| || | || ||||| ||||| || |||||||| || || Sbjct 56426622 TGAATGTTGTAGTCAGATAGAAGTCCATCCATCTTCCAGTTGCTTACCAGCAAAGATCAG 56426563 Query 104434 CCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTAC 104493 || || ||||||||||| ||||| || ||||| || || || || |||| ||||||| Sbjct 56426562 TCTTTGCTGATCAGGAGGAATTCCATCCTTATCTTGGATTTTGGCCTTTATATTTTCTGT 56426503 Query 104494 GGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT 104529 ||||| ||||| |||| ||||| || | ||| Sbjct 56426502 TGTATCCAAGGGTTCAACCTTGAGTGTGATGGCCTT 56426467 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 || |||||||||| ||| || || ||||| ||||| | || ||||| | || || || Sbjct 22135346 TTGTAGTCAGATAAAGTCCTTCCATCTTCCAGTTGCATGCCTGCAAAGGTCAGTCTTTGC 22135405 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 |||||| ||| |||||||| || || || || || || |||| |||||| |||| Sbjct 22135406 TGATCAAGAGAAATTCCTTCCTTGTCGTGGATTTTGGCCTTTATGTTTTCTTTTATATCC 22135465 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | |||| ||||||||||| || |||| | ||||| | ||||| || || ||||| Sbjct 22135466 CCGGGTTAAACCTCTAGTGTGATGGTCTGCCTCGTAAGGGCTTTTATGAAAATATGCAT 22135524 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 104404 GTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTT 104463 ||| || || ||||| ||||||||||| || | ||| || ||||| | || |||||||| Sbjct 28824672 GTCCTCCAGCTGTTTGCCAGCAAAAATCAGACACTGCTGGTCAGGCAGGATGCCTTCTTT 28824731 Query 104464 ATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAAT 104523 || || || || ||||| ||||| | | ||| || || || || ||||| || || || Sbjct 28824732 GTCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 28824791 Query 104524 AGTCTT 104529 ||||| Sbjct 28824792 GGTCTT 28824797 >seq3 Length=155691105 Score = 111 bits (122), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || |||||| | || || ||||| ||||||||||| || ||||| ||||| |||||||| Sbjct 117739843 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCT 117739784 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| || ||| | ||||| ||||| || ||||| ||| | ||||| || || || | Sbjct 117739783 GCTATATTCTGGCTAAAGAAGAGAGGTCTGATGCCTGGACTCACTTTTTCCAATGAGCTC 117739724 Query 269246 ATAAGCAGGGACGAAG 269261 || ||||| || |||| Sbjct 117739723 ATCAGCAGAGATGAAG 117739708 >seq11 Length=87554214 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 174432 AAGGAGTATTAATATCTACATGCTCAAAAACTGTTAATTCtttttttAACTTCATAGGTA 174491 ||||||| || ||||||| ||||||||| ||||| ||||| || |||||||| | |||| Sbjct 11162661 AAGGAGTGTTGATATCTATATGCTCAAAGACTGTAAATTCCTTCTTTAACTTTACTGGTA 11162720 Query 174492 ATGAGCAAGCCCTGTGCAACTCCGCTTTCAAACAATAACGTATACTGCCGTATTTACTTT 174551 |||| |||||||||||| ||||||| ||||| || | |||||| | | | || Sbjct 11162721 GAAGCCAAGGCCTGTGCAACTCGGCTTTCACCCAATAGCGCACACTGCCATGTCGGCCTT 11162780 Query 174552 CAAATGA 174558 | ||||| Sbjct 11162781 CGAATGA 11162787 >seq1615 Length=15529 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 || ||||| || |||||||||| ||| | || ||||| ||||| || ||||||||||| Sbjct 10813 TTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATC 10754 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || || ||||||||||| |||||| Sbjct 10753 AGTCTTTGCTGATCAGGAGGAATTCCT 10727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151350587821628