Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq16 102 7e-17 >seq16 Length=84478945 Score = 102 bits (112), Expect = 7e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | || |||||||| ||||||||| || | || |||||| Sbjct 65584577 GGTTACCTGGGATGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGAAGGACGTGATG 65584636 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 ||||| || || || ||| | || | ||||| |||||||| ||||| ||||| ||||| Sbjct 65584637 CCGCAAGCTGAGAACCACAGTCCAGCCATCAGGGAGCACGTGAACTCCCTGGGGGAAAAC 65584696 Query 128994 CTCAAAACGCT 129004 || || || || Sbjct 65584697 CTGAAGACCCT 65584707 Score = 86.0 bits (94), Expect = 6e-12 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 129092 GCTGCAGGAACGAGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACAT 129151 |||||| || |||||| ||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 65586746 GCTGCAAGAGGAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACAT 65586805 Query 129152 AGAATCATACATGAC 129166 |||| | |||||||| Sbjct 65586806 AGAAACCTACATGAC 65586820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447732260511920