Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq107 257 1e-63 seq9 105 5e-18 >seq107 Length=1146635 Score = 257 bits (284), Expect = 1e-63 Identities = 414/590 (70%), Gaps = 4/590 (1%) Strand=Plus/Minus Query 25388 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTA 25447 |||||||| ||| || || | || |||||||| ||||| || || | ||| | |||||| Sbjct 529488 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTA 529430 Query 25448 GACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGC 25507 | || || ||||||| ||| || ||||| || || || | || ||||| || | | Sbjct 529429 AATATGGGCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCAC 529370 Query 25508 CATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTC 25567 |||||||| ||||| | |||||||||||||| ||||| || || | | ||||| Sbjct 529369 GATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGT- 529311 Query 25568 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACA 25627 | |||||||| ||||| ||||| || || ||||| | | |||||| ||||| || | Sbjct 529310 CTCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGA 529251 Query 25628 TGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGA 25687 || | ||| || || || || || || | |||||| || || ||||| |||| || Sbjct 529250 GGGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGA 529191 Query 25688 TGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCA 25747 |||| | ||||| || |||||| |||| ||| || ||||| || || | Sbjct 529190 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTA 529131 Query 25748 CCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACT 25807 | || || || || |||| | | || |||| ||||| || |||| |||||||| Sbjct 529130 CTCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACT 529071 Query 25808 GGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCT-GTGCTCAAAGCCCCTCTTATCC 25866 |||| || || || || || ||||| || |||| || ||| || || || | ||| Sbjct 529070 GGAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTC-TGTCC 529012 Query 25867 AAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 25926 |||||||||| ||| ||||||| |||||||| || || ||||| || || ||||| Sbjct 529011 AAAAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTA 528952 Query 25927 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGCCTT 25976 | |||||||| || ||| |||||||||| |||| || ||| |||| Sbjct 528951 GCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTT 528902 >seq9 Length=116251907 Score = 105 bits (116), Expect = 5e-18 Identities = 123/165 (75%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| |||| || |||||||| ||||| || |||||||||||||| ||||| Sbjct 61685973 AGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 61686032 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| | |||||||||||||| ||||| || || ||||| | | Sbjct 61686033 ACGCCCAGGCCCATGT-CTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCAC 61686091 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| || | || | |||||| || || || || || Sbjct 61686092 CACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAG 61686136 Score = 95.1 bits (104), Expect = 8e-15 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| |||||||||||| || || || || || ||||| || |||| Sbjct 61690123 TGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTT 61690182 Query 25841 CCCTGTGCTCAAAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCT 25900 ||| || ||| | ||||||||||||| ||| ||||||| |||||||| | Sbjct 61690183 GTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTT 61690242 Query 25901 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 | || ||||| || || ||||| | |||||||| || Sbjct 61690243 TCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTGGATCC 61690282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340124164671093