Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq16 116 4e-21 >seq16 Length=84478945 Score = 116 bits (128), Expect = 4e-21 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| ||||||||||| || ||| |||| || |||||||||||||||||| |||| || | Sbjct 65584575 AGGGTTACCTGGGATGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGAAGGACGTGA 65584634 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| || ||||| || || || | || |||||||||||||| ||||| || | Sbjct 65584635 TGCCGCAAGCTGAGAACCACAGTCCAGCCATCAGGGAGCACGTGAACTCCCTGGGGGAAA 65584694 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||||| ||||| Sbjct 65584695 ACCTGAAGACCCTCAGGCT 65584713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 ||||||| || |||| |||||||||||||||||||| |||||||| || || ||||| | Sbjct 65586745 AGCTGCAAGAGGAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 65586804 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||| | |||||||| ||||| || Sbjct 65586805 TAGAAACCTACATGACAATGAAGAT 65586829 Score = 89.7 bits (98), Expect = 6e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 10295 CACAGGTTTCTCCCGTGTGAAAACAAGAGCAAGGCTGTGGAGCAGGTCAAGAATGCCTTC 10354 ||| | |||||||| |||||||||||||||||||| ||||||||||| |||| |||||| Sbjct 65585689 CACCGATTTCTCCCCTGTGAAAACAAGAGCAAGGCAGTGGAGCAGGTGAAGAGCGCCTTC 65585748 Query 10355 AGCAAGCTG 10363 |||||| || Sbjct 65585749 AGCAAGGTG 65585757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547357024300160