Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16 138 2e-27 seq23 91.5 2e-13 >seq16 Length=84478945 Score = 138 bits (152), Expect = 2e-27 Identities = 165/224 (74%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || || || || ||| |||||||||||| || |||| || |||||||||||| Sbjct 83710140 GTCTGGAATAGCTGCTCATCATCCCATTCTGGATGCTCCTGTTTGAGCACATCGCACACT 83710081 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 ||||| ||||||| ||||||||| || || |||||||| | |||||||||||| ||||| Sbjct 83710080 CTGTTATGTTCCCGGAGCCAGATTGTGGCATACATCATCAAACCAGGCACCAGACCAAAC 83710021 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 | || || || ||||| | ||| | | || | | || || |||||||| | | Sbjct 83710020 ACTTCCTGGCCCACAGCAAACTGCAGGTGCGCAGGGATGTGAGGCGGGTAGATCATCTCC 83709961 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 ||||| || ||||| | || ||||| | || || ||||| Sbjct 83709960 ACCTGCGTGTCCTTGACTGTTGGAGGATATACCTCTCCATCAAT 83709917 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 ||| |||||||||||||||||||| |||||||| || || ||| | ||| ||| | || Sbjct 83708960 TCTCACCCCATGTCCCAGTCCTTTGGTGAAGGCTGGTCCCCGCTTAAGATCTGTCTTGAA 83708901 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||||| ||||| || ||| |||| || |||||||| | ||||||||||||||| || Sbjct 83708900 GAACTGGTGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTGGTGCCCTGGGGGTC 83708841 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 ||| |||| | || | || ||| ||| ||||| |||| | | || || || | Sbjct 83708840 GGGGATGAACTTTCTTCTGAGGAGAAGTTTCTCCACCACGTCTTTAGAGTCAGGAAGTTC 83708781 Query 10208 ttttttACCTGGTGAACGAGAA 10229 ||| || |||| ||| |||| Sbjct 83708780 TTTCTTGCCTGAAGAATAAGAA 83708759 Score = 95.1 bits (104), Expect = 2e-14 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| | ||||| ||||| || | |||||||| || || | Sbjct 83710737 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCC 83710678 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATG-TAGTCATACTTTGTTTTATCAATCTC 9440 | ||||| || |||||||| | ||| | || |||| |||| | |||||| | Sbjct 83710677 AGTAGTATAGAGTTGTTGTAGA-GAAACTGTTGATAGTTGTACTGCTGGTCATCAATTTG 83710619 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||| | || |||| || | |||||||||||| | |||||||||| | | || || Sbjct 83710618 AAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGTGTGTTAAACTCAGCAGCAATCCG 83710559 Query 9501 ATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 |||||||||||||| | | ||| ||||| || || | |||| | | |||| Sbjct 83710558 GTTTTGGTACTGGAATTGTTGGTTGAAA-AGCAGCTCTGGGTCAAACTTGAGTTTGAAGT 83710500 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA 9584 | ||||| || | ||||| ||||| Sbjct 83710499 GATAGCCACTCAAATGCTGTACATA 83710475 >seq23 Length=14171072 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| |||| |||||| | || || || |||| | || | | Sbjct 4856735 CTCACCCCATGGCCCAAGGCTTTGGTGAAGCCAGGACCCATCTTGCCAGAG--GTTTTGA 4856792 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | ||||| || ||||| ||||| |||||||||||||||| | ||||||||| ||||| | Sbjct 4856793 AGAACTGATGGGTGAAGTGTTGTGCAAAAAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 4856852 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| ||||||| Sbjct 4856853 CTGGGATGAACGTCCTCC 4856870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708496095889040