Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq3 107 2e-18 seq119 102 1e-16 seq15 102 1e-16 >seq1 Length=194850757 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 145038472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 145038413 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 145038412 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 145038353 Query 63332 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 || |||| ||| || || | ||||||| || Sbjct 145038352 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 145038320 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| || || ||||| ||||| || || || || || |||||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 145048956 CTGTTTCTTATACCATA 145048940 >seq3 Length=155691105 Score = 107 bits (118), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 33328 TCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33387 || ||||| || || || || |||||||| |||||||| ||||| || || | ||| || Sbjct 117739710 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTT 117739769 Query 33388 AGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33446 ||||| ||||| | ||| || ||||| || ||||| || |||||||| ||||||||||| Sbjct 117739770 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAGGC 117739828 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 ||||||||||||| || ||||| ||||||||||||||||| || || ||||| |||| Sbjct 117747332 CCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAA 117747391 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33796 ||||||| || |||| ||| ||| | ||||| | | || ||| || |||| Sbjct 117747392 AATATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 >seq119 Length=1067461 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| || || ||||| || || ||||| ||||| || |||||||| || || || || | Sbjct 31901 CCTCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCT 31842 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || || || || || ||||| |||||||| ||||| || |||||||||| Sbjct 31841 TGAGCCAGAAAATCGACGCAAAAGAACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGG 31782 Query 33446 C 33446 | Sbjct 31781 C 31781 >seq15 Length=109054052 Score = 102 bits (112), Expect = 1e-16 Identities = 147/207 (71%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154 ||| |||||||| | |||||||||| | || |||| | | || ||||| || ||||| || Sbjct 46625651 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTC 46625592 Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214 || | || || | |||| | ||| ||| ||||| | | || || | ||||| Sbjct 46625591 ACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCC 46625532 Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31271 ||||||||||| ||||| ||||| |||| | ||| || | |||| | || || Sbjct 46625531 TCTATAATCTTCATCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCC 46625472 Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298 ||| | ||||||||||| |||||||| Sbjct 46625471 AGAACGTGGAGCTATTCTTCCATAGCA 46625445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622921962851560