Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq188 96.9 3e-15 seq19 93.3 4e-14 seq12 87.8 2e-12 seq7 86.0 6e-12 >seq188 Length=611413 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| |||||||| || | |||||| |||| | || | | Sbjct 74340 AATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 74281 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| || || || || ||||| || Sbjct 74280 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 74221 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || || || | | |||||| || || ||||| | | | | | |||||| || Sbjct 74220 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 74161 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||| || || || || || | || ||||| ||| | || ||||| || Sbjct 74160 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGAGGTGG 74113 >seq19 Length=57279966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 || |||||| | || || || || | || || || | |||||| | || | || | Sbjct 4087796 CACAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCC 4087855 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||||||||||| | ||||| ||||| || || ||||| || |||||||| Sbjct 4087856 CAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGA 4087915 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 || || || ||||| | || |||||| || || ||||||| | | | ||||| Sbjct 4087916 CCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTA 4087975 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || ||||| || || | || ||||||||| | || ||||| || Sbjct 4087976 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 4088026 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | ||||| ||||| || || ||||| || |||||||| || Sbjct 4088088 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 4088147 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || |||||| || || ||||||| | | | ||||| ||| Sbjct 4088148 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4088207 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || ||||| || || | || ||||||||| | || ||||| || Sbjct 4088208 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 4088254 >seq12 Length=155355395 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 26865 AAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT 26924 || ||||| || ||||||||||||||| |||| || | | ||||||||||| | ||| Sbjct 56601264 AAGGAAGGCATTCCTCCCGATCAACAAGGACTGATCTTTGCTGGCAAACAACTGGGGGAT 56601205 Query 26925 GATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAG 26983 | | ||| ||| | ||||| |||||||||| | ||||||| | ||||| || ||||| Sbjct 56601204 G-GATGAACTTCATCTGACTACGACATTCAAAAGGCATCTACTCTTCATCTTGTGCTGAG 56601146 Query 26984 ACTTA 26988 | ||| Sbjct 56601145 AATTA 56601141 >seq7 Length=173684459 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/128 (77%), Gaps = 4/128 (3%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || || ||||| || ||||| ||||| |||||||| |||| | ||||| ||||| ||| Sbjct 2561226 GATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAA 2561167 Query 26922 GATG-ATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCC 26979 |||| || || | | | | ||||| ||||||||||| || |||||| | || || || Sbjct 2561166 GATGGATGGA--CTTTATCTGACTACAACATTCAAAAGGAGTCTACTCTTCACCTTGTGT 2561109 Query 26980 TGAGACTT 26987 |||||||| Sbjct 2561108 TGAGACTT 2561101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478643008189520