Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq107 138 3e-27 seq1 100 7e-16 >seq107 Length=1146635 Score = 138 bits (152), Expect = 3e-27 Identities = 404/615 (66%), Gaps = 12/615 (2%) Strand=Plus/Plus Query 111315 TTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTGG 111374 ||||| || || ||||| || || || |||||||| | | || || | |||||| Sbjct 528869 TTTCCTCTGCTGACAACCAAACGTGTATTCTGGAAGGGTGTCTTGGAGGAGTTGCTGTGG 528928 Query 111375 TTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGAT 111434 ||||| ||| |||||||| || ||||| | | || || ||||| |||||| Sbjct 528929 TTTATCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGAAAATCTGGGAT 528988 Query 111435 GGAAATGGATCACGTGACTTTCTAGATTCAGT-TGGTCTTGTCGACAACG-AAGAAGGTG 111492 | |||| ||| || |||||| | || ||| ||| || || || | ||||||| | Sbjct 528989 GCCAATGCATCCCGAGACTTTTTGGA--CAGACTGGGATTCTCCACCAGACAAGAAGGGG 529046 Query 111493 ATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGC 111552 | || || |||||||| || || || ||| | || ||||||||||| |||||| | | Sbjct 529047 ACCTGGGTCCAGTTTATGGCTTCCAGTGGAGGCATTTTGGTGCAGAATACAAAGATAAG- 529105 Query 111553 ACGACTCATATGATTCA---CAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 |||||| || ||||| || ||| || ||| | ||||| || || ||| || | Sbjct 529106 --GACTCAGATTATTCAGGTCAAGGAGTAGACCAACTGCAGAAAGTGATCGATACCATCA 529163 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAA-CCCAAATGCATTGGAA 111668 | | |||||| | | | || || ||| |||| || || |||||| | || Sbjct 529164 AAACCAACCCTGATGACAGAAGAATCATCATGTGTGCCTGAAATCCCAAAGACCTTCCTC 529223 Query 111669 AAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTT 111728 | |||| || || ||||| ||| | |||||||| || || | ||| ||| Sbjct 529224 TGA-TGGCGCTGCCCCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTG 529282 Query 111729 TCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 || ||||| |||| || | || | || || | || || || || || || || || Sbjct 529283 TCCTGCCAGCTGTACCAAAGGTCGGGAGACATGAGCCTGGGCGTGCCCTTCAACATCGCC 529342 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTGAATTC 111848 || || || | || || | | | |||| ||| | || || || || ||||| || Sbjct 529343 AGCTATGCCTTGCTCACCTACATGATCGTGCATGTCACCGGCCTGAAGCCAGGTGATTTT 529402 Query 111849 ATTCACGTTATCGGAGATGCGCATGTTTACACAAACCACATTGATGCACTTAAAACACAG 111908 | || | | |||||||| ||| ||||| ||||||||||| | || ||||| ||| Sbjct 529403 GTACATACTTTGGGAGATGCCCATATTTACCTGAACCACATTGAGCCTCTGAAAACTCAG 529462 Query 111909 TTGAAGCGCAAACCA 111923 | |||| ||||| Sbjct 529463 CTTCAGCGAGAACCA 529477 >seq1 Length=194850757 Score = 100 bits (110), Expect = 7e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 364118 AGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACA 364177 |||| |||| ||||||||| || || |||| |||||||| || || || ||| | |||| Sbjct 145039527 AGCTTTGGTATGCCATCATTGAGTCTCAGACAGAGACAGGTACCCCTTACATGCTCTACA 145039586 Query 364178 AAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACC 364237 ||||||| || || || ||| |||||||||| ||||||| || || || ||||||| Sbjct 145039587 AAGATTCCTGTAATCGGAAGAGCAACCAGCAGAACCTTGGAACCATCAAGTGCAGCAACC 145039646 Query 364238 TATGTACCGA 364247 | || || || Sbjct 145039647 TGTGCACAGA 145039656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303299477834462