Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq188 109 5e-19 seq19 93.3 4e-14 >seq188 Length=611413 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| |||||||| || | || ||| |||| || ||| ||| Sbjct 74340 AATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 74281 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| || ||||| || ||||| || Sbjct 74280 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 74221 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| ||||| | | ||||||||| || ||||| | | | | | | ||| || || Sbjct 74220 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 74161 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| || || || || || Sbjct 74160 CATCCAGAAGGAGTCCAC 74143 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| || ||| ||| Sbjct 73883 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 73824 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| || Sbjct 73823 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73764 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||||| | | | | | ||| || ||| Sbjct 73763 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 73704 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 73703 ATCCAGAAGGAGTCCAC 73687 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| |||| || ||| ||| Sbjct 74111 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74052 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| || ||||| || Sbjct 74051 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73992 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | ||||||||| || ||||| | | | | | | ||| || ||| Sbjct 73991 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 73932 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 73931 ATCCAGAAGGAGTCCAC 73915 >seq19 Length=57279966 Score = 93.3 bits (102), Expect = 4e-14 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 || |||||| | || || || || | || || || | || ||| | || || ||| | Sbjct 4087796 CACAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCC 4087855 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || ||||||||||||| | ||||| ||||| || || |||||||| |||||||| Sbjct 4087856 CAGCGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGA 4087915 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 || ||||| || || | || ||||||||| || ||||||| Sbjct 4087916 CCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATG 4087956 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || || | || || ||| ||| Sbjct 4088028 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 4088087 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| || || |||||||| |||||||| || Sbjct 4088088 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAG 4088147 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| || || | || ||||||||| || ||||||| Sbjct 4088148 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATG 4088184 Score = 86.0 bits (94), Expect = 5e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || || ||| ||| Sbjct 4088484 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4088543 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| || || |||||||| ||||| || || Sbjct 4088544 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4088603 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147 ||||| || || | || ||||||||| || ||||||| Sbjct 4088604 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATG 4088640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429919017662355