Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq7 93.3 4e-14 seq13 89.7 4e-13 >seq7 Length=173684459 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || || ||||| || ||||||| | |||| || |||| || || Sbjct 2561318 ATGCAGATCTTCGTGAAAACCCTTACGGGAAGA-CCATCACGCTCGAGGTTGAACCCTCG 2561260 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 || || | | | | |||||| ||||| ||||| ||||| | || ||||||| Sbjct 2561259 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2561200 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 |||||||| |||| ||| ||||| ||| | ||||||| || | | || || ||| Sbjct 2561199 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAAC 2561140 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGA 115501 |||||||| ||||||||| | || | ||||||||| Sbjct 2561139 ATTCAAAAGGAGTCTACTCTTCACCTTGTGTTGAGA 2561104 >seq13 Length=143360832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 115361 GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTAT 115420 |||||| |||||| ||||| ||||| | || ||||||||||||||| |||| | Sbjct 88038953 GTAAAAGCAAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTT 88039012 Query 115421 GCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCT 115480 || ||||| ||| | ||||||| || | | || || ||||||||||| |||||| Sbjct 88039013 GCTGGCAAGCAACTGGAAGATGGACGGACTTTATCTGACTACAACATTCAAAAGGAGTCT 88039072 Query 115481 ACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| || | ||||||||||| || || || Sbjct 88039073 ACTCCTCACCTTGTGTTGAGATTTCGTGGGGG 88039104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425327199044920