Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq2163 140 2e-28 seq647 127 1e-24 seq438 127 1e-24 seq100 118 7e-22 seq188 104 2e-17 seq22 98.7 7e-16 seq12 98.7 7e-16 seq18 95.1 8e-15 seq7 95.1 8e-15 seq19 89.7 3e-13 seq13 82.4 5e-11 >seq2163 Length=9074 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1668 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1727 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1728 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1762 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| | |||||||||||||| ||||||||||||||||||||| |||||||||||| | Sbjct 3698 CTCTCTTTCCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCTC 3757 Query 20007 GGTAATATTTAGCCTTA 20023 ||||||||||||| Sbjct 3758 ACCTATATTTAGCCTTA 3774 >seq647 Length=82070 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 61195 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 61136 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 61135 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 61101 >seq438 Length=171919 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 80265 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 80324 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 80325 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 80359 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 162568 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 162627 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 162628 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 162662 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 96883 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 96942 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 96943 GCCGGTATTTAGCCTTA 96959 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 166071 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 166130 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 166131 GCCGGTATTTAGCCTTA 166147 >seq100 Length=1207509 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 264400 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACGGTGGGAATCTCGT 264341 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||||||||||||||| || Sbjct 264340 TCATCCATTCATGCGCGTCACTAATTAGATGATGA 264306 >seq188 Length=611413 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 |||||||| | |||| ||||| || || ||| |||||| || || ||||| || ||| Sbjct 74113 CCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 74172 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || |||||||| || || | || || |||| |||| Sbjct 74173 AGGGTGCGGCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGG 74232 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || ||| ||| ||||||| || || || | || || Sbjct 74233 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 74292 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || |||||||||||||| |||||||| Sbjct 74293 TCGAGGGTGATGGTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCAT 74339 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||| || |||| ||||| ||||| || || ||| |||||| || || ||||| || || Sbjct 73656 ACCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 73715 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || || | || || | || || ||||||||||| || | || || |||| ||| Sbjct 73716 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGG 73775 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||| || |||||| || || ||| ||||||| || || || | || || Sbjct 73776 GATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 73835 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || |||| ||| |||||||| ||||||||| Sbjct 73836 CTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 73884 >seq22 Length=111700775 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||| Sbjct 62310141 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATTGGTCTCGT 62310082 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 62310081 GCTGGTATTTAGCCTTA 62310065 >seq12 Length=155355395 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 44428516 CTCTCTCTTCGAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 44428457 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 44428456 GCCGGTATTTAGCCTTA 44428440 >seq18 Length=69800736 Score = 95.1 bits (104), Expect = 8e-15 Identities = 68/77 (88%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 42396868 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCT-ACAGTACTTGTTGACTATCGGTCTCGT 42396926 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 42396927 GCTGGTATTTAGCTTTA 42396943 >seq7 Length=173684459 Score = 95.1 bits (104), Expect = 8e-15 Identities = 72/84 (86%), Gaps = 7/84 (8%) Strand=Plus/Minus Query 25915 TGGCTGTGGTTT-CGCTAGATAGTAGATAGGGG------GTAATCTCGTTAATCCTTTCA 25967 |||||||||||| |||| |||||||| |||||| | ||||||||| |||| |||| Sbjct 33622575 TGGCTGTGGTTTTCGCTGGATAGTAGGTAGGGGACAGGAGGAATCTCGTTCATCCATTCA 33622516 Query 25968 TGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||| Sbjct 33622515 TGCGCGTCACTAATTAGATGACGA 33622492 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||||| |||||||||||| ||||| ||||| ||| | | | || Sbjct 2561107 CAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCATC 2561166 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 2561167 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2561226 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | ||||| || ||||| | | ||||| |||||| || | || || || Sbjct 2561227 CTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGGT 2561286 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| | |||||||||||| |||||||| Sbjct 2561287 CTT-CCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 >seq19 Length=57279966 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| |||| || || ||| ||| || || || ||||| |||| Sbjct 4088028 TACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 4087969 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || ||||| || || || | || || |||| | Sbjct 4087968 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAG 4087909 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| || || ||| ||||||| || || || | || | Sbjct 4087908 GAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCA 4087849 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || || || |||| ||| |||||||| |||||||| Sbjct 4087848 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4087800 >seq13 Length=143360832 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||| |||| |||||||||||| ||||| ||||| ||| ||| | || Sbjct 88039090 CAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATC 88039031 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 88039030 TTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 88038971 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | |||||| || ||||| | | ||||| |||||| | | | || || Sbjct 88038970 CTGGATTTTTGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATGATGGT 88038911 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||| | | |||||||| ||| |||||||| Sbjct 88038910 CTTCCCCATAAGGGTTTTCATGAAGATCTGCAT 88038878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334933969690271