Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1 118 1e-21 seq15 102 1e-16 seq3 93.3 5e-14 >seq1 Length=194850757 Score = 118 bits (130), Expect = 1e-21 Identities = 118/153 (77%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 145038472 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 145038413 Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186 ||||| || |||||||| ||||| || | ||| |||||| | | ||||| ||||||| Sbjct 145038412 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATATCTAAATGCCA 145038353 Query 63187 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 || |||| ||| || || | ||||||| || Sbjct 145038352 AGGCTCCAGGTAAATAGCAAATGCTCCAGGACG 145038320 Score = 109 bits (120), Expect = 7e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| || | ||| |||||||||||||| | || || || || || || || || || | Sbjct 145027300 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTCGAGACAGCAATCCTTGCCGCCAGGA 145027241 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 ||||||| || ||||| | ||||| | || || ||| |||| || |||| ||| |||| Sbjct 145027240 TGGCATAGTCGGGATGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 145027181 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAG 63977 ||| || || || || ||| | |||| |||||||| || ||||||| Sbjct 145027180 GTTCCACTGTGGTGACTCCACTGTATAAGCCTTGGATTACTTTCATAG 145027133 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| || || ||||| ||||| || || || || || |||||||| | Sbjct 145049076 ACCTGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATG 145049017 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 || |||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 145049016 GATTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAA 145048957 Query 62312 CTATTTCTAAGACCGTA 62328 || ||||| | ||| || Sbjct 145048956 CTGTTTCTTATACCATA 145048940 >seq15 Length=109054052 Score = 102 bits (112), Expect = 1e-16 Identities = 237/355 (67%), Gaps = 7/355 (2%) Strand=Plus/Minus Query 30405 CCGGTTGATCCAAACCCTTGATCTCCTCTATCTGTACTATCTAGATATTGTACTTCTTTC 30464 || || || ||||| ||| | ||||| || || ||| | | ||| ||||||| Sbjct 46625698 CCAGTAGAACCAAAACCTCCTGCACCTCTTTCAGTGTCATCCAAAACTTGAACTTCTTCT 46625639 Query 30465 AGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACA 30524 | |||||||||| | || |||| | | || ||||| || ||||| || ||| | || || Sbjct 46625638 ATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCTGTCACCCTTTTTGACT 46625579 Query 30525 TTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCG 30584 | || | ||| ||| ||||| | | || || | |||||| ||||||||||| Sbjct 46625578 TCAAACTTTTCTTTGCCAAAATTAAACAATACAACACCAACATTTCCTCTATAATCTTCA 46625519 Query 30585 TCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCT 30641 ||||| ||||| |||| | ||| || | |||| | || ||||| | |||||| Sbjct 46625518 TCTATAACACCAGCTCCCACATCTATGAAGTATTTTGCAGCCAAGCCAGAACGTGGAGCT 46625459 Query 30642 ATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGTCTT 30701 ||||| |||||||| ||| | | || ||| || || || | | || ||| Sbjct 46625458 ATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGAATGTCCGTTTTCA--CAATGGCTT 46625401 Query 30702 TCTCC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCAGC 30754 ||||| || || | |||||||||||||| || || | || || || || || Sbjct 46625400 TCTCCATAGGTGGTACGGTATAATCATAAGCACTGTACAGGTCGTAGCCCGCGGC 46625346 >seq3 Length=155691105 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 ||||||||||| || ||||| ||||||||||||||||| || || ||||| |||||| Sbjct 117747334 AAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATAAAA 117747393 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATA 33153 ||||| || |||| ||| ||| | ||||| | | || ||| || |||| Sbjct 117747394 TATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATA 117747442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633606329983600