Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq188 123 2e-23 seq7 114 1e-20 seq11 89.7 4e-13 >seq188 Length=611413 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 73883 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 73824 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || ||||| || Sbjct 73823 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73764 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || |||||||||||||| ||| | || ||| ||||||| | ||||| |||||| Sbjct 73763 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 73704 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || |||| || | |||||| Sbjct 73703 ATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGAGGGGAGGT 73656 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || ||||| ||||| || || || |||| || || ||||| ||| Sbjct 74339 ATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74280 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| ||| || || ||||||||||| || || ||||| || Sbjct 74279 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 74220 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || || ||||||| | ||||| |||||| Sbjct 74219 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 74160 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 74159 ATCCAGAAGGAGTCCACC 74142 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 74111 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74052 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||| || || ||||| || Sbjct 74051 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73992 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || || ||||||| | ||||| |||||| Sbjct 73991 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 73932 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 73931 ATCCAGAAGGAGTCCACC 73914 >seq7 Length=173684459 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| ||| Sbjct 24644873 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 24644932 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || ||||||||||| || || || || || Sbjct 24644933 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 24644992 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || |||||| |||||||| | || ||| ||||||| | ||||| |||||| Sbjct 24644993 CAGAGGCTGATCTTTGCCAGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 24645052 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || |||||| | || || || |||| || | |||||| Sbjct 24645053 ATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGAGGGGAGGT 24645100 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/198 (70%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || ||||| | || || || || |||| || || || ||| || | Sbjct 2561319 GATGCAGATCTTCGTGAAAACCCTTACGGG-AAGACCATCACGCTCGAGGTTGAACCCTC 2561261 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || | ||| ||||| || || ||||| || ||||| || ||||| Sbjct 2561260 GGATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCA 2561201 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || || ||||| ||||| || | || ||| | || | || || ||||| Sbjct 2561200 GCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAA 2561141 Query 22398 CATTCAAAAAGAATCCAC 22415 ||||||||| || || || Sbjct 2561140 CATTCAAAAGGAGTCTAC 2561123 >seq11 Length=87554214 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 || |||| || ||||| || || | || || || || || | || || || || ||| Sbjct 46295704 AGGTGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCGCCCTCGAGGTCGAGCCCA 46295763 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || | | | || || ||||| || || |||||||||||||| || || || || | Sbjct 46295764 G-GACATCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCGCCTGACC 46295822 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| || || | ||||||||| | ||||| | ||||| | || || |||| Sbjct 46295823 AGCAGTGTCTGATTTTCGTGGGCAAACAGCTGGAGGACAGCAGCACCCTGTCGGACTACA 46295882 Query 22397 ACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||| |||||| | || | || |||| |||| || || Sbjct 46295883 ACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGTGGCGG 46295931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419711420875165