Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq19 201 2e-46 seq188 185 2e-41 seq7 167 4e-36 seq14 158 2e-33 seq11 141 2e-28 seq1 131 3e-25 seq2 125 1e-23 seq15 104 4e-17 >seq19 Length=57279966 Score = 201 bits (222), Expect = 2e-46 Identities = 180/223 (81%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 4088017 AGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 4087958 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| |||||||| ||||| || || |||||||| |||||||||||| Sbjct 4087957 CCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 4087898 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422 || || || ||||| |||||||| |||||||||||| |||| || || |||||||| Sbjct 4087897 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTCCAAGGT 4087839 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||| || || || |||||||| ||||| ||||||||| || Sbjct 4087838 GATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTGTG 4087796 Score = 196 bits (216), Expect = 9e-45 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 4088245 AGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 4088186 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| |||||||| ||||| || || |||||||| |||||||||||| Sbjct 4088185 CCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCC 4088126 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| ||||||||| |||||||||||| | || || |||| ||| Sbjct 4088125 TTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTG 4088066 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || ||||||||||| ||||| |||||||| Sbjct 4088065 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088028 Score = 188 bits (208), Expect = 1e-42 Identities = 167/209 (80%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || ||||||||||| |||||||| || || || || || | |||||||| Sbjct 4088692 ACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4088633 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| |||||||| ||||| || || ||||| || |||||||||||||| || || Sbjct 4088632 AGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGG 4088573 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||||| |||||||||||| | || || |||| ||||||||| || Sbjct 4088572 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4088513 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||| ||||| |||||||| Sbjct 4088512 CCAGTGAGGGTCTTCACGAAGATCTGCAT 4088484 Score = 185 bits (204), Expect = 2e-41 Identities = 174/219 (79%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 4088473 AGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 4088414 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || || || ||||| || || ||||| || |||||||||||| Sbjct 4088413 CCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 4088354 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422 || || || ||||| |||||||| |||||||||||| |||| || || |||| ||| Sbjct 4088353 TTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC-GCTGGGCTCCACCTCCAGGGT 4088295 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || ||||||||||| ||||| |||||||| Sbjct 4088294 GATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088256 >seq188 Length=611413 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 73657 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 73716 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| ||||| ||||| || || || |||||||| || Sbjct 73717 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGG 73776 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||||||| | || || Sbjct 73777 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 73836 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| ||||| |||||||| Sbjct 73837 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 73883 Score = 178 bits (196), Expect = 2e-39 Identities = 170/218 (78%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 73894 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 73953 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| ||||| || || || || || |||||||| || ||||| ||| Sbjct 73954 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 74013 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || ||||| ||||||||| |||||||||||| | || || || | |||| Sbjct 74014 TTGTCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTG 74073 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| || || || |||||||| ||||| |||||||| Sbjct 74074 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 74111 Score = 170 bits (188), Expect = 4e-37 Identities = 176/229 (77%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 ||||||| |||| ||| || |||||||| || |||||||| || ||||| || || | Sbjct 74122 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 74181 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | |||||| ||||| || || || || || |||||||| || ||||| ||| Sbjct 74182 CCGTCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCC 74241 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| || |||||||||||||| |||||||||||| | || || || | |||| Sbjct 74242 TTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTG 74301 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGCTATTAT 68472 ||||| || || || | ||| || ||||| ||||||||| | || |||| Sbjct 74302 ATGGTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCATTGT-CTGTTAT 74349 >seq7 Length=173684459 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||||||| || |||||||| || |||||||| || ||||| Sbjct 24645099 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24645040 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || | ||| || || || || || ||||| || || Sbjct 24645039 AGGGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 24644980 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| |||||||| |||||||||||| | || || Sbjct 24644979 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 24644920 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| ||||| |||||||| Sbjct 24644919 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 24644873 Score = 84.2 bits (92), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| ||||| || ||||||| || | |||||||||||||||| Sbjct 58885308 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 58885249 Query 84516 CCCACATCGGG 84526 ||||||| ||| Sbjct 58885248 CCCACATTGGG 58885238 >seq14 Length=163896628 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | || |||| |||||||| || ||||||||||| ||||||| || ||||| Sbjct 150521852 CCTCCCCTCAGACGCAGGACCAAGTGCAGAGTGGACTCTTTCGGGATGTTGTAGTCGGAC 150521911 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||||| || || || || || || || |||| || || Sbjct 150521912 AGGGTGCGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGC 150521971 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||| |||||||| || ||||| ||||||||| || ||||||||| | || || Sbjct 150521972 GTGCCCTCCTTGTCCTGGATCTTCGCCTTGACGTTCTAGATGGTGTCACTGGGCTCCACC 150522031 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| ||||| |||||||| Sbjct 150522032 TCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 150522078 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 68255 CAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAA 68314 |||||| || ||||| ||||| |||||||| || || || || || |||||||| | Sbjct 161574190 CAAGTGCAGAGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTCCAG 161574131 Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||||| ||| || || | || || ||||| || || ||||||||||||||||| || Sbjct 161574130 CTGCTTCCTGGCAAAGATCAACCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGAT 161574071 Query 68375 CT 68376 || Sbjct 161574070 CT 161574069 >seq11 Length=87554214 Score = 141 bits (156), Expect = 2e-28 Identities = 169/227 (74%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| ||| || ||||||||||| |||||||| || || || Sbjct 46295931 CCGCCACGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 46295872 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || | || || | ||| || || |||| || || | || ||||| || || Sbjct 46295871 AGGGTGCTGCTGTCCTCCAGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGGCGGG 46295812 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGT-CTGCTGATTCTAC 68413 ||||| ||||||||||| ||||| || ||||| ||||||| ||| ||| | || || Sbjct 46295811 ATGCCCTCCTTGTCTTGGATCTTGGCTTTGACATTCTCGATGATGTCCTG--GGCTCGAC 46295754 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | || |||||| || ||||| |||||||| || || ||||||| Sbjct 46295753 CTCGAGGGCGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCA 46295707 >seq1 Length=194850757 Score = 131 bits (144), Expect = 3e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 || ||||| || ||||||||||| |||||||||||||| || || || | ||||| Sbjct 134277699 ACAAAGTGCAG-GTGGACTCTTTCTGGATGTTATAATCAGAAAGAGTGTGGCTATCTTTC 134277757 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || || || ||||| || | ||||| || || ||||||| ||| ||||| Sbjct 134277758 AGCTGCTTGCCTGCAAAAATGAGCCTCTCCTGGTCAGGAGGGATGCCTTTCTTATCTTGG 134277817 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||| |||| ||| ||| || | | || || ||| ||||||||| || Sbjct 134277818 ATCTTGGCCATGACATTCTCCATGATGCCATTGGGCTCCACCTCCTGGGTGATGGTCTTG 134277877 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||||||| ||||| || ||||| Sbjct 134277878 CCAGTCAGGGTCTTCACGAAGATTTGCAT 134277906 >seq2 Length=174332312 Score = 125 bits (138), Expect = 1e-23 Identities = 141/186 (76%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| | || |||||||| |||||||| || || || || || | Sbjct 24775731 AGACGCAGGACAAGGTGCAAGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGG 24775672 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| || ||||| ||||| || || ||||| || |||||||||||| Sbjct 24775671 CCATCTTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCC 24775612 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422 || || || ||||| ||||||| ||||||||||| |||| | || || | | ||| Sbjct 24775611 TTATCCTGGATCTTGGCCTTGAGATTGTCGATGGTGTC-GCTGCTCTCCACCTAGAGGGT 24775553 Query 68423 GATGGT 68428 |||||| Sbjct 24775552 GATGGT 24775547 >seq15 Length=109054052 Score = 104 bits (114), Expect = 4e-17 Identities = 157/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 |||| || || ||||| || |||||||| || |||||||| || || || | || | Sbjct 17280335 AGGCACAGGACTAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACAT 17280276 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | || ||||| | ||| || | |||| | ||| | |||||||| Sbjct 17280275 CCATCTTCCAGGTGTTTCCCAGTGAAGATCAACCTTTTCTAGTCACAGGCGATGCCTTCT 17280216 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||| |||||||||| ||| ||| | |||||| | | || || | |||| Sbjct 17280215 TTGTCTTGGATCTTTGCCT-GACATTCTCAACGGTGTCACTGGGCTTAACCTCAAGGGTG 17280157 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 |||||||| || || | | | || | ||| || ||||||||| Sbjct 17280156 ATGGTTTTGCCAGTTAAGATTTTCAGGAAGATTTGCATTATG 17280115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921585062772520