Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 8e-14 seq119 87.8 3e-12 >seq3 Length=155691105 Score = 93.3 bits (102), Expect = 8e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || ||| |||| |||||| | || || || || || ||||||||||| | || || Sbjct 117739843 GGGGAAAGGGTGGTGGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCT 117739784 Query 42756 TCCATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 | || |||||||| ||| ||| |||| | |||||| |||||||| || || || || || Sbjct 117739783 GCTATATTCTGGCTAAAGAAGAGAGGTCT-GATGCCTGGACTCACTTTTTCCAATGAGCT 117739725 Query 42815 CATCAGCAGGGACGA 42829 ||||||||| || || Sbjct 117739724 CATCAGCAGAGATGA 117739710 >seq119 Length=1067461 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || |||||||||||||| || | || || || || |||||| Sbjct 31778 GTAGCCTTTGCTGCGGTGGAAGGCATCTTCTTCTCTGGTTCTTTTGCGTCGATTTTCTGG 31837 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | ||||||||| || || ||||| || || || || |||||||| Sbjct 31838 CTCAAGAAACGAGGACT-GATGCCCGGGCTTACGTTCTCCAATGAGCTTATTAGCAGGGA 31896 Query 42827 CGAGG 42831 |||| Sbjct 31897 TGAGG 31901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944300942458160