Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq7 120 7e-22 seq19 113 1e-19 seq13 111 4e-19 seq4 89.7 1e-12 seq112 87.8 4e-12 seq15 86.0 1e-11 >seq7 Length=173684459 Score = 120 bits (132), Expect = 7e-22 Identities = 142/191 (74%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || | ||| ||||| | ||| || || || || Sbjct 2561129 TCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCATCTTCCAGTTGCTTGCCAGCAAAA 2561188 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||||||| |||||||||||||| ||||| || ||| Sbjct 2561189 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTTACATTT 2561248 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | ||| | ||| || ||||||||||| |||||||| || || || || ||| Sbjct 2561249 TCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCC-GTAAGGGTTTTCACG 2561307 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 2561308 AAGATCTGCAT 2561318 >seq19 Length=57279966 Score = 113 bits (124), Expect = 1e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || || |||||| Sbjct 4087990 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 4087931 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || || || ||||| ||||||||||| || || || || || Sbjct 4087930 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 4087871 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || | ||||| ||||| |||||||| ||||| ||| Sbjct 4087870 TCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 4087811 Query 288463 AATATCTGCATTATG 288477 || ||||||||| || Sbjct 4087810 AAGATCTGCATTGTG 4087796 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || ||||| | ||| ||||| ||||| || ||||| | || ||||| || ||| Sbjct 4088695 AGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4088636 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | || || || |||||||| || | ||| || | || || ||||| |||||| Sbjct 4088635 TCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 4088576 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 ||||| || || || ||||| || || | || || | || || || || ||||| ||| Sbjct 4088575 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4088516 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| |||||||| Sbjct 4088515 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088484 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || || |||||| Sbjct 4088218 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 4088159 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || || || ||||| ||||||||||| || || || ||||| Sbjct 4088158 ATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 4088099 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | || || | || || || || ||||| ||||| || || || ||||| ||| Sbjct 4088098 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACG 4088039 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4088038 AAGATCTGCAT 4088028 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | || ||||| || ||||| | || || || || ||| Sbjct 4088446 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 4088387 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | || || ||||| ||||||||||| || || || || || Sbjct 4088386 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTC 4088327 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| | || || || || ||||| ||||| || || || ||||| ||| Sbjct 4088326 TCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 4088267 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 4088266 AAGATCTGCAT 4088256 Score = 89.7 bits (98), Expect = 1e-12 Identities = 135/191 (71%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || |||| ||||| | ||| || || || ||| Sbjct 43334528 TCCTTTTGAATGTTGTAGTCAGATAAAGTCTGTCCATCTTCCAGTTGCTTGCCAGCAAAG 43334469 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||||||| |||||||||||||| || || | ||| Sbjct 43334468 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCCTTTGCATTT 43334409 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | |||| | ||| || | ||| | ||| || ||||| | | || || ||| Sbjct 43334408 TCTATTGTATCG-AGGGTTCAACCTTGAGTGCGATGGTGTTCCCCATAAAGGTTTTTACG 43334350 Query 288463 AATATCTGCAT 288473 || ||||| || Sbjct 43334349 AAGATCTGTAT 43334339 >seq13 Length=143360832 Score = 111 bits (122), Expect = 4e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || ||||| || || ||||| | | || ||||| ||||| | ||| || || || || Sbjct 88039068 TCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAA 88039009 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| | || |||||||| |||||||||||||| ||||| || ||| Sbjct 88039008 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTTGCTTTTACATTT 88038949 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 ||||| | ||| | ||| || | |||| |||| |||||||| | || || || | | Sbjct 88038948 TCTATTGTATCCGAGGGTTCAACCTTGAGCATGATGGTCTTCCCCATAAGGGTTTTCATG 88038889 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 88038888 AAGATCTGCAT 88038878 >seq4 Length=91394100 Score = 89.7 bits (98), Expect = 1e-12 Identities = 116/159 (73%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 288315 TCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||||||||| | ||| || | || |||||||| | ||| ||| | || |||||||| Sbjct 78197581 TCCGTCTTCCAGTTGCTTGCA-GCAAAGATCAGTCCCTGCTGATTACAAGGAATTCCTTC 78197523 Query 288375 TTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGT 288434 ||||||||||| || || |||||||||||| | | ||| | ||| || || || || Sbjct 78197522 CTTATCCTGGATCTTGGCCTTCACGTTTTCTGTCGTATCTGAGGGTTCAACCTCAAGGGT 78197463 Query 288435 GATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| ||||| | || || || || || || ||||| || Sbjct 78197462 GATGATCTTCTCTGTAAGGGTTTTTACAAAGATCTGTAT 78197424 >seq112 Length=1107004 Score = 87.8 bits (96), Expect = 4e-12 Identities = 130/182 (71%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 288268 AGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAAT 288327 ||||||| ||| || ||||| | || ||||| | | || | ||| |||| ||| Sbjct 705470 AGATGAAGAGTGGGCTCCTTTTGAGTGTTGTAGTCAGATAAAGTCCATCCACCTTCCAAT 705529 Query 288328 TGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 || || || || |||||||| | |||| | |||| || |||||||| ||||||||| Sbjct 705530 TGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGAA---GGAATTCCTTCCTTATCCTGG 705586 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || || || |||||| | | ||| | | |||||| || || |||| |||||| Sbjct 705587 ATCTTGGCCTTTACATTTTCTTTTGTATCAAT-GGTTCTACCTCAAGTATGATGGTCTTC 705645 Query 288445 CC 288446 || Sbjct 705646 CC 705647 >seq15 Length=109054052 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || | | ||||| || ||| | || || ||||| ||| Sbjct 79400558 TCTTTCTGGATCTTGTAATCAGAAGGAGTGCGGCCATCTCACAGCTGCTTGCCTGCAAAG 79400617 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || | ||| || | | ||| |||||| |||||||||| || || || || || Sbjct 79400618 ATGAGCCTCTGCTGCTCAGGAGCGATGCCTTCTGTATCCTGGATCTTAGCCTTGACATTC 79400677 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | | ||| | || || || || ||||| |||| | |||||||||||| | | Sbjct 79400678 TCAATGGTGTTGCTGGGCTCCACCTCCAGAGTGATGGTCTGGCTGGTCAGAGTCTTTATG 79400737 Query 288463 AATATCTGCATTATG 288477 || || |||||| || Sbjct 79400738 AAGATTTGCATTTTG 79400752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179605414482398