Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq188 136 4e-27 seq19 132 5e-26 seq7 107 2e-18 seq15 104 2e-17 seq13 100 3e-16 seq1 95.1 1e-14 seq14 89.7 5e-13 seq2 82.4 8e-11 >seq188 Length=611413 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| ||||| Sbjct 74128 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 74187 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| |||||||||||| || || || || || || Sbjct 74188 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 74247 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || ||| ||| ||| ||| | || |||| || ||||| || | || | |||| Sbjct 74248 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 74307 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || || ||||| ||||| || |||||| Sbjct 74308 TTGCCAGTTAAGGTTTTCACGAAGATCTGCATT 74340 Score = 125 bits (138), Expect = 7e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | | |||||| ||||| Sbjct 73900 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCT 73959 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| |||||||||||| || || || || || || Sbjct 73960 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCC 74019 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || | |||| Sbjct 74020 TGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 74079 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||| || || ||||| || ||||| Sbjct 74080 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 74111 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| |||||||||||| Sbjct 73687 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 73746 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||| || || || || || || || || || ||| Sbjct 73747 GCAAATATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 73806 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 73807 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 73866 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 73867 TTCACGAAGATCTGCAT 73883 >seq19 Length=57279966 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| |||||||||||| Sbjct 4087996 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4087937 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||||||||||||||| ||||| || || || || || ||| Sbjct 4087936 GCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 4087877 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | |||||||||||||| || Sbjct 4087876 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGGTC 4087817 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 4087816 TTCACGAAGATCTGCATT 4087799 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| |||||||||||| Sbjct 4088224 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 4088165 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | ||||||| |||||||||||||||||| ||||| || || || || || ||| Sbjct 4088164 GCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 4088105 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || |||| || ||||| || | ||| | ||||||||| || | || Sbjct 4088104 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTGAGGGTC 4088045 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4088044 TTCACGAAGATCTGCAT 4088028 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || ||||| || |||||||| || | | ||||| | ||| Sbjct 4088695 AGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4088636 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | ||||||| ||||||||| |||||||| ||||| || || Sbjct 4088635 TCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 4088576 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || ||||| || | || | |||| Sbjct 4088575 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4088516 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| || ||||| Sbjct 4088515 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088484 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 4088452 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 4088393 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||||| ||||||||| |||||||| ||||| || || || || || ||| Sbjct 4088392 GCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 4088333 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || ||||| || | || | ||||||||| || | || Sbjct 4088332 ACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 4088273 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 4088272 TTCACGAAGATCTGCAT 4088256 >seq7 Length=173684459 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| ||||| |||| | Sbjct 24645069 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCTG 24645010 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || || || || || || || || || || ||| Sbjct 24645009 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTG 24644950 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 24644949 ACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 24644890 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 24644889 TTCACGAAGATCTGCAT 24644873 Score = 102 bits (112), Expect = 8e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| || |||| || || || |||||||||||||| || | | || | | Sbjct 2561104 TCTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCC 2561163 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| || |||||||| ||| |||| || | ||||| || |||||||||||||| || Sbjct 2561164 ATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 2561223 Query 64348 TTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTAC 64407 || || ||||| |||||| || | |||||| || || || || | || | Sbjct 2561224 ATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGAT 2561283 Query 64408 GGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || || | ||||| ||||| || ||||| Sbjct 2561284 GGTCTT-CCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 >seq15 Length=109054052 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64250 GATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCA 64309 || ||||| || || |||||||| | ||||| | ||| ||||||||||| ||| Sbjct 79400555 GACTCTTTCTGGATCTTGTAATCAGAAGGAGTGCGGCCATCTCACAGCTGCTTGCCTGCA 79400614 Query 64310 TAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACA 64369 | ||||||| |||||| || |||| || |||||| | || || || || ||| ||| Sbjct 79400615 AAGATGAGCCTCTGCTGCTCAGGAGCGATGCCTTCTGTATCCTGGATCTTAGCCTTGACA 79400674 Query 64370 ACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | || | | || ||||| || | ||| | ||||| || ||||| ||| ||| Sbjct 79400675 TTCTCAATGGTGTTGCTGGGCTCCACCTCCAGAGTGATGGTCTGGCTGGTCAGAGTCTTT 79400734 Query 64430 ACGAAAATTTGCATTTT 64446 | ||| ||||||||||| Sbjct 79400735 ATGAAGATTTGCATTTT 79400751 >seq13 Length=143360832 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || ||||| | ||| || ||| || || || |||||||||||||| || | Sbjct 88039105 ACCCCCACGAAATCTCAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGA 88039046 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| || |||||||| ||| |||| || | ||||| || ||||| Sbjct 88039045 TAAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGG 88038986 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATC 64383 ||||||||| || || || |||||| |||||| || | |||||| Sbjct 88038985 AATTCCTTCCTTATCCTGGATTTTTGCTTTTACATTTTCTATTGTATC 88038938 >seq1 Length=194850757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||| ||||| | | ||| | |||| ||||||||||| Sbjct 134277710 GTGGACTCTTTCTGGATGTTATAATCAGAAAGAGTGTGGCTATCTTTCAGCTGCTTGCCT 134277769 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||||| || |||||| ||||| || |||| || ||||| || || | | Sbjct 134277770 GCAAAAATGAGCCTCTCCTGGTCAGGAGGGATGCCTTTCTTATCTTGGATCTTGGCCATG 134277829 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||||| | || || ||||| || || | ||||||||| |||| || Sbjct 134277830 ACATTCTCCATGATGCCATTGGGCTCCACCTCCTGGGTGATGGTCTTGCCAGTCAGGGTC 134277889 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| |||||||| || Sbjct 134277890 TTCACGAAGATTTGCATCTT 134277909 >seq14 Length=163896628 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| | |||||||| || | | |||||| | ||||| || |||||||| Sbjct 150521882 GTGGACTCTTTCGGGATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGGTGCTTGCCA 150521941 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||| || || | || || || || || || || ||| Sbjct 150521942 GCAAAGATCAGCCTCTGCTGGTAAGGGGGCGTGCCCTCCTTGTCCTGGATCTTCGCCTTG 150522001 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || |||| || ||||| || | || | |||||||||||||| || Sbjct 150522002 ACGTTCTAGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGTC 150522061 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 150522062 TTCACGAAGATCTGCAT 150522078 >seq2 Length=174332312 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | || || | ||||| ||||||||||| Sbjct 24775710 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCA 24775651 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | ||||||| ||||||||| |||||||| ||||| || || || || || Sbjct 24775650 GCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTT 24775598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499624558140040