Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq188 120 3e-22 seq7 120 3e-22 seq14 104 2e-17 seq19 100 3e-16 seq11 89.7 5e-13 seq2 82.4 7e-11 >seq188 Length=611413 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| || ||||| | Sbjct 73669 CGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 73728 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || | |||| | |||||| ||||| || |||||||||||| Sbjct 73729 TCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTG 73788 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | |||| |||||| | ||| || |||| ||| | Sbjct 73789 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 73848 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 73849 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 73884 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| || ||||| Sbjct 73897 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 73956 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| ||||| || |||||||||||| Sbjct 73957 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTG 74016 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | |||| |||||| | ||| || |||| ||| | Sbjct 74017 TCCTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 74076 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 74077 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 74112 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| || ||||| Sbjct 74125 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 74184 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| ||||| || |||||||||||| Sbjct 74185 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTG 74244 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || |||| ||| | Sbjct 74245 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 74304 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || | ||||| || || |||||||| Sbjct 74305 GTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCAT 74339 >seq7 Length=173684459 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| ||| || ||||| | Sbjct 24645087 CGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 24645028 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| | || |||||| | |||||| || || || |||||||||||| Sbjct 24645027 TCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 24644968 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | |||| |||||| | ||| || |||| ||| | Sbjct 24644967 TCCTGGATCTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 24644908 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||||||||| || || || || ||||||||| Sbjct 24644907 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 24644872 >seq14 Length=163896628 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| | || ||||| ||| || ||||| | Sbjct 150521864 CGCAGGACCAAGTGCAGAGTGGACTCTTTCGGGATGTTGTAGTCGGACAGGGTGCGTCCA 150521923 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || || ||||| |||||| | |||||| | || || ||||||||||| Sbjct 150521924 TCTTCCAGGTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGCGTGCCCTCCTTG 150521983 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| ||| ||||| | | || |||||| | ||| || |||| ||| | Sbjct 150521984 TCCTGGATCTTCGCCTTGACGTTCTAGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 150522043 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 150522044 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 150522078 >seq19 Length=57279966 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || |||||||| || || ||||| || | ||||| | Sbjct 4088014 CGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA 4087955 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||| | | |||||| |||||||| ||||| ||||| Sbjct 4087954 TCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTA 4087895 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| |||||| | ||| || || | ||| | Sbjct 4087894 TCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATG 4087835 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||||||||| || || || || |||||||| Sbjct 4087834 GTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4087800 >seq11 Length=87554214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/214 (70%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || |||||||| || || ||||| || || |||| Sbjct 46295919 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCTGCTG 46295860 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || |||||||| || || | |||| | |||||| || || || |||||||||||| Sbjct 46295859 TCCTCCAGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTG 46295800 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || |||| | |||| | ||||| | |||||| |||| || | Sbjct 46295799 TCTTGGATCTTGGCTTTGACATTCTCGATGATGTCC-TGGGCTCGACCTCGAGGGCGATG 46295741 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA 127112 || ||||| ||||| || || ||||| ||||||| Sbjct 46295740 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCA 46295707 >seq2 Length=174332312 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| || || ||||| || | || || ||| || ||||| || ||| Sbjct 24775710 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCA 24775651 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | | |||||| || ||||| ||||| ||||| ||| ||| || |||| Sbjct 24775650 GCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTG 24775591 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 || | |||| |||||| | ||||| || | || ||| Sbjct 24775590 AGATTGTCGATGGTGTCGCTGCTCTCCACCTAGAGGGT 24775553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475481536273840