Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16 176 7e-39 >seq16 Length=84478945 Score = 176 bits (194), Expect = 7e-39 Identities = 210/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||||||| || |||||||||||||| | || || || ||||| Sbjct 83711798 AAGGGACAGCCCTTCACATTGTTGCAGATGAGGGACTGAATCGAGGCAGTGTTAACGATT 83711739 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || Sbjct 83711738 TTGAAACCGACTTCTCCACCAAACGTGCTTGGCTTCCAGTAGTTAGGAGAACATATAGGA 83711679 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||| ||||| ||||| || |||| || | ||| ||| || ||| Sbjct 83711678 TTACCCATCAGTCCTTTTAAGGAGAACGGTGCTCCCATTTCTACCATGGACTCCCCAAAG 83711619 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | || |||||| | || || | | | ||| || ||||| || || || | | Sbjct 83711618 ATGGCATCCGGGCGCGGTCTCTCCACCAGCAGGGCAGGATACAGTTCCACGGCATCAATG 83711559 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||||| ||||| ||||||| ||||||||| ||||||||||| ||| Sbjct 83711558 TCGCCGTAGAGCGCTTCCAGCTCGGCAGCCATCTCCTTCTCCCCT 83711514 Score = 152 bits (168), Expect = 7e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || || | |||||| ||| ||||||| || || || |||||||| |||||||| || Sbjct 83710140 GTCTGGAATAGCTGCTCATCATCCCATTCTGGATGCTCCTGTTTGAGCACATCGCACACT 83710081 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||| ||||| | ||||| || ||||| |||||||| ||||| ||||| | ||||||| Sbjct 83710080 CTGTTATGTTCCCGGAGCCAGATTGTGGCATACATCATCAAACCAGGCACCAGACCAAAC 83710021 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 ||||| | ||||| ||||| |||| | | || | | |||| || | ||| | | Sbjct 83710020 ACTTCCTGGCCCACAGCAAACTGCAGGTGCGCAGGGATGTGAGGCGGGTAGATCATCTCC 83709961 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 ||||| || || ||||| || || ||||| | || || ||||| |||| Sbjct 83709960 ACCTGCGTGTCCTTGACTGTTGGAGGATATACCTCTCCATCAATTACCT 83709912 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 ||| |||||||| |||| |||| | ||||| || ||||| ||| | ||| ||| | || Sbjct 83708960 TCTCACCCCATGTCCCAGTCCTTTGGTGAAGGCTGGTCCCCGCTTAAGATCTGTCTTGAA 83708901 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 || ||||| || ||||| || | || || || ||||||| ||||||||||||||| || Sbjct 83708900 GAACTGGTGGGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTGGTGCCCTGGGGGTC 83708841 Query 10241 GGGGATAAA 10249 |||||| || Sbjct 83708840 GGGGATGAA 83708832 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | | || || || ||||| || || |||||| || | Sbjct 83707406 CTTACGCGTGGAGCAGTTTTCACCGTAGAATCCGGTCCGGGTGCAGTCGCACTTGTACTG 83707347 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| |||| |||||||| || ||||| || || || |||| ||||||||||| || Sbjct 83707346 GTCAAATCCCATGGTCATGCACACACCTCGGTTTTGACATGGGTTGGAACAGCAAGGATT 83707287 Query 10960 GGCTGCAATTTAAAAGA 10976 ||| ||||| |||||| Sbjct 83707286 TGCTACAATTAAAAAGA 83707270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723698679969400