Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq188 156 4e-33 seq7 143 3e-29 seq11 138 1e-27 seq19 136 4e-27 seq14 125 7e-24 seq2 95.1 1e-14 seq119 84.2 2e-11 >seq188 Length=611413 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| ||||| | || ||||| ||||||||| |||| || ||| ||| Sbjct 74340 AATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 74281 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||| |||| ||||| ||||| || ||| ||||||| Sbjct 74280 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 74221 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 74220 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 74161 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| | ||||| ||| Sbjct 74160 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGAGGTGGC 74112 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 74111 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74052 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 74051 GACACCATCGAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 73993 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 73992 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 73933 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| | ||||| ||| Sbjct 73932 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTCAGAGGTGGC 73884 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 73883 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 73824 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| ||||||| Sbjct 73823 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73764 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| |||||||||| Sbjct 73763 CAGAGGCTGATATTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 73704 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| ||||| |||||| |||| || || Sbjct 73703 ATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGAGGGGAGG 73657 >seq7 Length=173684459 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 24644873 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 24644932 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | ||||| Sbjct 24644933 GACACCATCGAGAATGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAG 24644992 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||||||||||| || | |||||||| |||||||||| Sbjct 24644993 CAGAGGCTGATCTTTGCCAGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 24645052 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| ||||| |||||| |||| || || Sbjct 24645053 ATCCAGAAGGAGTCCACCCTGCACTTGGTCCTGCGTCTGAGGGGAGG 24645099 >seq11 Length=87554214 Score = 138 bits (152), Expect = 1e-27 Identities = 172/229 (75%), Gaps = 5/229 (2%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 |||| || || || || || || |||||||| |||||| || |||| |||||| ||| | Sbjct 46295707 TGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCGCCCTCGAGGTCGAGCCCAG-G 46295765 Query 38305 ACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCAA 38363 ||| | | | | | |||| || |||| ||||| ||||| || |||||| ||||| Sbjct 46295766 ACATCATCGAGAATGTCAAAGCCAAGATCCAAGACAAGGAGGGCAT-CCCGCCTGACCAG 46295824 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGC-GCACCCTCAACGACTACAA 38422 ||| | || |||| || ||||||||||||||| ||| ||| ||||||| |||||||| Sbjct 46295825 CAGTGTCTGATTTTCGTGGGCAAACAGCTGGAGGAC-AGCAGCACCCTGTCGGACTACAA 46295883 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||||| |||||||||| || | |||||| Sbjct 46295884 CATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGTGGCGGC 46295932 >seq19 Length=57279966 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 4087799 AATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAG 4087858 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | || | || |||| || || || || ||||| ||||||| Sbjct 4087859 CGACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCA 4087918 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 4087919 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4087978 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| |||||| ||||||| || Sbjct 4087979 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 4088026 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| |||||||| | || || ||| ||| Sbjct 4088028 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGT 4088087 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| ||||||| Sbjct 4088088 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCA 4088146 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 4088147 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4088206 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| |||||| ||||||| || Sbjct 4088207 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 4088254 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 4088256 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 4088315 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| || || || || ||||| | ||||| Sbjct 4088316 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAG 4088375 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | || ||||| |||||||| || | ||||| || ||||||||| Sbjct 4088376 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 4088435 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| |||| |||||| ||||||| || Sbjct 4088436 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 4088482 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| ||| Sbjct 4088484 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 4088543 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || ||||| | ||||| Sbjct 4088544 GACACCATCGAGAACG-TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCA 4088602 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | ||| ||||| |||||||| || | ||||| || |||||||| Sbjct 4088603 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAA 4088662 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || |||||| |||| || ||| |||| || ||| Sbjct 4088663 CATCCAGAAAGAGTCCACCCTGCATCTGGTCCTCCGTCTGAGGGGTGGC 4088711 >seq14 Length=163896628 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 150522078 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 150522019 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| | ||| | |||| Sbjct 150522018 GACACCATCTAGAACG-TCAAGGCGAAGATCCAGGACAAGGAGGGCACGCCCCCTTACCA 150521960 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| || ||||| || | |||||||| ||||||||| Sbjct 150521959 GCAGAGGCTGATCTTTGCTGGCAAGCACCTGGAAGATGGACGCACCCTGTCCGACTACAA 150521900 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || | || ||||| ||||| |||||| |||| || || Sbjct 150521899 CATCCCGAAAGAGTCCACTCTGCACTTGGTCCTGCGTCTGAGGGGAGG 150521852 >seq2 Length=174332312 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 38277 ACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTC 38336 ||||||||| || | || ||| || ||||| | | | | || || | || |||| Sbjct 24775547 ACCATCACCCTCTAGGTGGAGAGCAGCGACACCATCGACAATCTCAAGGCCAAGATCCAG 24775606 Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 || || || || ||||| | ||||| ||| ||||||| | ||| ||||| |||||||| Sbjct 24775607 GATAAGGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAA 24775666 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | || || || |||||||||||||| || || | || |||| | || ||| Sbjct 24775667 GATGGCCGTACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCTTGCACCTTGTCCTG 24775726 Query 38457 CGTTTGAGAGGCGGC 38471 ||| ||||||| ||| Sbjct 24775727 CGTCTGAGAGGTGGC 24775741 >seq119 Length=1067461 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 ||||| || || ||||||||||||||||| || || || || ||||||||||| ||| Sbjct 27623 ACCAGGTTCTCATTGACGATGCCGTCGCTTGCCGCAAAGAAAGCCAGCACGTGGGATATG 27564 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || | | ||| | || |||| | ||||||| | |||||||||| ||||||||| Sbjct 27563 AAGTATCTCTCCTCCTCCTTCAGGGCTTCCCAGTGCTGGATGTCCTTGGAGAGGTCCACC 27504 Query 133399 T 133399 | Sbjct 27503 T 27503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500152536749440