Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq14 224 4e-53 seq12 150 7e-31 seq7 129 2e-24 seq13 111 6e-19 seq11 98.7 4e-15 seq16 91.5 6e-13 seq19 87.8 7e-12 seq9 84.2 9e-11 >seq14 Length=163896628 Score = 224 bits (248), Expect = 4e-53 Identities = 1024/1596 (64%), Gaps = 41/1596 (3%) Strand=Plus/Minus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 ||| | || ||||||||||| ||||||| || || || ||||| | ||| | || || Sbjct 67902195 GCAGTCGGCATTGATCTTGGCACCACCTACTCGTGCGTGGGTGTCTTCCAGCACGGGAAA 67902136 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || || || || || ||||| || || ||||| || || | || || || Sbjct 67902135 GTGGAGATAATTGCCAATGATCAGGGCAACCGAACCACCCCAAGCTATGTCGCCTTCACT 67902076 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 || | ||| |||| | || | ||||| || ||||| || || ||| | Sbjct 67902075 GACACCGAACGACTGATCGGTGATGCTGCAAAGAATCAAGTTGCGATG--AACCCCACCA 67902018 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 |||| || | |||||| || || || || || | | | |||||||| | || ||| Sbjct 67902017 ACACGGTTTTTGATGCCAAGCGATTGATCGGACACAGATTTGATGATGCTGTCGTTCAAT 67901958 Query 451152 AAGAGA--AAAAATT--CTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATT 451207 || | ||| ||| | ||| ||| || || ||| | || | ||| | | Sbjct 67901957 CCGACATGAAACATTGGCCCTTC--ATGGTG--GTGAATGATGCCGGCAGACCCAAGGTG 67901902 Query 451208 CAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTT 451267 |||||| | || || || || || |||| ||| || || || | ||||| |||||| Sbjct 67901901 CAAGTAGAGTACAAGGGAGAGACGAAAAGTTTCTACCCAGAGGAGGTGTCATCAATGGTT 67901842 Query 451268 CTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTA 451327 || || || ||||| |||| |||||| ||| | || | ||||| |||| || Sbjct 67901841 CTGACGAAGATGAAGGAAATTGCAGAAGCATACCTGGGGAAGACTGTTACCAATGCTGTG 67901782 Query 451328 ATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACAT 451387 | || || || ||||| |||||||| | || || |||||||| |||||||| ||| Sbjct 67901781 GTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGTCAAGCAACCAAAGATGCTGGAACC 67901722 Query 451388 ATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATAT 451447 ||||||||| | ||||| || ||||||| ||||| || || || |||||| | || ||| Sbjct 67901721 ATTGCTGGTCTCAATGTACTGAGAATTATCAATGAGCCAACTGCCGCTGCTATTGCTTAT 67901662 Query 451448 GGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGA 451507 || ||| ||| || | | || | |||| | | | ||||| | || || Sbjct 67901661 GGCTTAGACAAA---AAGGTTGGGGCTGAGAGAAATGTGCTGATTTTTGACCTGGGAGGT 67901605 Query 451508 GGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACC 451567 || ||| |||| || | || ||||||||||||| | ||||| || || | || Sbjct 67901604 GGCACTTTTGATGTGTCCATCCTCACAATTGAAGATGGAATTTTTGAGGTCAAATCCACA 67901545 Query 451568 AATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGTGGAATGGTTGAAA 451627 ||| || || || |||| || ||||| | || || ||| || | || | Sbjct 67901544 GCTGGAGACACCCACTTAGGTGGAGAAGACTTCGACAACCGAATGGTCAACCATTTTATT 67901485 Query 451628 ACTGATGTTCAA-CGAAAACTAAAAGTA-GATATTTCTACTAACCAAAAAGCACTTAGAC 451685 | || |||||| || || | | ||| | || || | ||| | | ||| | || | Sbjct 67901484 GCCGA-GTTCAAGCGCAAGC-ATAAGAAGGACATCAGTGAGAACAAGAGAGCTGTCAGGC 67901427 Query 451686 GTCTTAAAACATCAGCAGAAAAAGCTAAAATTACACTCAGTT-CAACACAAACTACTAGT 451744 |||| ||| | || ||||||| ||| ||| || || ||| | | || Sbjct 67901426 GTCTCCGCACAGCTTGTGAGCGAGCTAAACGTACCCTCTCTTCCAGCACCCA-GGCCAGC 67901368 Query 451745 ATAAACATTGATAGTTTAGTTGATGGAATGGATTATGCTACTACTCTTACCCGTGCTAAA 451804 || | || ||| | | ||| ||||| || | ||| | | ||||||||| | Sbjct 67901367 ATTGAGATAGATTCTCTGTATGAGGGAATCGACTTCTATACCTCCATCACCCGTGCTCGA 67901308 Query 451805 TTTGAATCAATTTGTTCCAGTATTTTTGCACGG-GTAATGAAACCTGTTGATCAAGTATT 451863 |||||| | || | | | |||| | || || | ||||| || ||| | Sbjct 67901307 TTTGAA-GAGTTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTCGAGAAAGCCCT 67901249 Query 451864 ACATGATTCTAAAATTAG-TAAAGATAAAATTGATGAAATTGTGCTTGTAGGAGGTTCTA 451922 | ||| | || |||| ||| | | || |||| ||||| || || || ||||||| Sbjct 67901248 TCGAGATGC-CAAGTTAGATAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCTA 67901190 Query 451923 CACGAATTCCTAAAATTCAAGATATGTT----GTCTTCTTATTTTGGAGGAAAACAACTA 451978 | ||||||| || ||||| | || | | |||||| | |||||| |||| Sbjct 67901189 CTAGAATTCCCAAGATTCAGAAGCTGCTTCAAGACTTCTTCAAT----GGAAAAGAACTG 67901134 Query 451979 TGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATT 452038 ||||||| | || ||||| || |||||||| |||||||| || || || ||||| || Sbjct 67901133 AATAAGAGCATCAACCCTGACGAGGCTGTTGCCTATGGTGCAGCTGTCCAGGCAGCCATC 67901074 Query 452039 CTAACAGG-TTCAGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCT 452097 || | || || || ||| || | |||| | || | | ||||| || ||||| Sbjct 67901073 CTGTCTGGAGACAAAT-CTGAGAATGTTCAAGATCTGTTGCTGTTGGATGTCACTCCTCT 67901015 Query 452098 ATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTC 452157 ||| ||||| ||||||| ||||||||| | |||||| | || || || ||| | Sbjct 67901014 ATCACTTGGGATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACTAC 67900955 Query 452158 TATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGT--GATAACCAACCAGGTGTA 452215 || ||| || ||| || || || | || | | | || ||||| || || || Sbjct 67900954 CATCCCTACCAAGCAGACACAGACCTTCA--CCACCTACTCCGACAACCAGCCTGGCGTG 67900897 Query 452216 ACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAA 452275 ||||| || | |||||| || ||||| ||||| ||||| ||| || || | Sbjct 67900896 CTCATTCAGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAATCTGCTCGGCAAG 67900837 Query 452276 TTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTAT 452335 ||| || || ||| |||||| || | || |||||| || ||| | || | | Sbjct 67900836 TTTGAGCTCACAGGCATACCTCCTGCACCCCGTGGTGTTCCTCAGATCGAAGTCACATTT 67900777 Query 452336 GATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTTGAAAAATCATCTGGAAAATCA 452395 ||| ||||||| ||||| ||||||||||| ||| || || || | |||||| | Sbjct 67900776 GATATTGATGCCAATGGCATTCTTAATGTATCTGCTGTGGATAAGAGTACAGGAAAA-GA 67900718 Query 452396 GAA-AAAATTACAATTACTAATGATAAAAACCGTTTATCTAAAGAAGATATTGAAAAAAT 452454 ||| || || || |||||||| || || |||||| || ||||| ||||| || Sbjct 67900717 GAACAAGATCACCATTACTAACGACAAGGGCCGTTTGAGCAAGGAAGACATTGAGCGTAT 67900658 Query 452455 GGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 ||| | ||||| || || | |||| ||| ||||| Sbjct 67900657 GGTCCAGGAAGCTGAGAAGTATAAGGCTGAAGATGA 67900622 >seq12 Length=155355395 Score = 150 bits (166), Expect = 7e-31 Identities = 400/603 (66%), Gaps = 16/603 (3%) Strand=Plus/Minus Query 451896 ATGAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTT----G 451951 |||| ||||| || || || |||||||| ||||||| || ||||| | || | | Sbjct 127663514 ATGATATTGTCCTGGTGGGTGGTTCTACTAGAATTCCCAAGATTCAGAAGCTGCTTCAAG 127663455 Query 451952 TCTTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCA 452011 |||||| | | |||| |||| ||||||| | || ||||| || |||||||| Sbjct 127663454 ACTTCTTCAATAG----AAAAGAACTGAATAAGAGCATCAACCCTGACGAGGCTGTTGCC 127663399 Query 452012 TATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTT-CAGATGATGAAAAATTAGGAGA 452070 |||||||| || || || ||||| || || | || || || ||| || | ||| Sbjct 127663398 TATGGTGCAGCTGTCCAGGCAGCCATCCTGTCTGGAGACAAATC-TGAGAATGTTCAAGA 127663340 Query 452071 TATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGAT 452130 | | || | | ||||| || |||||||| ||||| ||||||| ||||||||| | || Sbjct 127663339 TCTGTTGCTGTTGGATGTCACTCCTCTATCACTTGGGATTGAAACTGCTGGTGGAGTCAT 127663280 Query 452131 GACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTAC 452190 |||| | || || || ||| | || ||| || ||| || || || | || Sbjct 127663279 GACTGTCCTCATCAAGCGCAATACTACCATCCCTACCAAGCAGACACAGACCTTCACCAC 127663220 Query 452191 AGCAAGT--GATAACCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATG 452248 | | | || ||||| || || | ||||| || | |||||| || ||||| ||| Sbjct 127663219 --CTACTCCGACAACCAGCCTGGCATGCTCATTCAGGTTTATGAAGGTGAGCGTGCCATG 127663162 Query 452249 ACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGG 452308 || ||||| ||| || || | ||| || || ||| |||||| || | Sbjct 127663161 ACCAAGGATAACAATCTGCTCGGCAAGTTTGAGCTCACAGGCATACCTCCTGCACCCCGT 127663102 Query 452309 GGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGT 452368 || |||||| || ||| | || | |||| ||||||| ||||| ||||||||||| | Sbjct 127663101 GGTGTTCCTCAGATCGAAGTCACATTTGATATTGATGCCAATGGCATTCTTAATGTATCT 127663042 Query 452369 GCAGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCG 452427 || || || || | |||||| |||| || || || ||||| || || || || Sbjct 127663041 GCTGTGGATAAGAGTACAGGAAAA-GAGAACAAGATCACCATTACAAACGACAAGGGCCA 127662983 Query 452428 TTTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGA 452487 ||| || ||||| ||||| ||||| | ||||| || || | |||| ||| || Sbjct 127662982 TTTGAGCAAGGAAGACATTGAGCGTATGGTCCAGGAAGCTGAGAAGTATAAGGCTGAAGA 127662923 Query 452488 TGA 452490 ||| Sbjct 127662922 TGA 127662920 >seq7 Length=173684459 Score = 129 bits (142), Expect = 2e-24 Identities = 160/218 (73%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| ||||| || || || || || || || || || |||||| | || Sbjct 2561318 ATGCAGATCTTCGTGAAAACCCTTACGGG-AAGACCATCACGCTCGAGGTTGAACCCTCG 2561260 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| ||||| || |||||||||||||||||||||||||| Sbjct 2561259 GATACAATAGAAAATGTAAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2561200 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | ||||| | || || ||||| ||||||||| | ||||| | || || || Sbjct 2561199 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAAC 2561140 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || |||||| | || || ||||| Sbjct 2561139 ATTCAAAAGGAGTCTACTCTTCACCTTGTGTTGAGACT 2561102 >seq13 Length=143360832 Score = 111 bits (122), Expect = 6e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||| | ||||| || | || || || || | || | |||||| | || Sbjct 88038878 ATGCAGATCTTCATGAAAACCCTTATGGGGAAGACCATCATGCTCAAGGTTGAACCCTCG 88038937 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| |||||| || |||||||||||||||||||||||||| Sbjct 88038938 GATACAATAGAAAATGTAAAAGCAAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 88038997 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | ||||| | || || ||||| ||||||||| | ||||| | || || || Sbjct 88038998 CAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGGACTTTATCTGACTACAAC 88039057 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGA 391265 ||| | ||||| | || | |||| | || || ||| Sbjct 88039058 ATTCAAAAGGAGTCTACTCCTCACCTTGTGTTGAGA 88039093 >seq11 Length=87554214 Score = 98.7 bits (108), Expect = 4e-15 Identities = 173/248 (70%), Gaps = 7/248 (3%) Strand=Plus/Plus Query 96047 TATGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA- 96105 |||||||| |||||||||||| | | || || ||||| ||| || | | || |||| Sbjct 39875409 TATGCAATCTGTGGCACTAGGAGGTAATCTGGGTTTGGATCA--CATAACATTGAATAAA 39875466 Query 96106 -GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTA 96164 | ||||||| |||||| ||| ||| || || ||| | | ||| ||| | | Sbjct 39875467 TGAATAAAAGAACTTTAGAAATAGTTAGAGCAGGAGACCACTATGATCTTAGAATTTTGA 39875526 Query 96165 AACAAATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTT 96224 ||||||| ||| || || ||||||||||||||||||| ||| ||||| | | Sbjct 39875527 GACAAATTCTACCATTATTATTAATATTTGGATGATAAATTCTTGTTGTAAATGCAGCCT 39875586 Query 96225 TAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATT-TCTAATTGGAATACTCCACCC 96283 |||| || || | || |||||| ||||||| |||| || || |||||| ||||| Sbjct 39875587 TAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAA--AGAATACACCACCT 39875644 Query 96284 TCATAGGG 96291 | ||| || Sbjct 39875645 TGATATGG 39875652 >seq16 Length=84478945 Score = 91.5 bits (100), Expect = 6e-13 Identities = 168/242 (69%), Gaps = 7/242 (3%) Strand=Plus/Plus Query 96052 AATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--GGAT 96109 ||| | ||||||||||||||| || || ||||| ||| || | || | || |||| Sbjct 21073833 AATCTCTGGCACTAGGGGATCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATGGAT 21073890 Query 96110 AAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAAACAA 96169 |||| |||||| ||| |||| || || ||| | | || ||||||| | |||| Sbjct 21073891 AAAATAACTTTAGAAATAATTAAGGCAGGAGACCACTGCTCTT--AAAATATTGAGACAA 21073948 Query 96170 ATTGCACCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTTTAGGA 96229 ||| || || | ||||||||||||||||||| | | ||||| || ||||| Sbjct 21073949 ATTCTGCCATTACTGTTAATATTTGGATGATAAATTCTTG-TGTAAATGCAACCTTAGGT 21074007 Query 96230 GGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCTCATAG 96289 || || | || |||||| ||| ||| ||||| || |||||| ||||| | |||| Sbjct 21074008 GGTTTGAAGGGCTAGTCTGTAGGGAAATGAATTTTCAAAAAGAATACACCACCTTGATAG 21074067 Query 96290 GG 96291 || Sbjct 21074068 GG 21074069 >seq19 Length=57279966 Score = 87.8 bits (96), Expect = 7e-12 Identities = 100/133 (75%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 391134 AAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGTTTAATTTTCTCAGGGAAA 391193 ||||| || |||||||||||||||||||||||||| ||| | | || || | || || Sbjct 43334422 AAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAG 43334481 Query 391194 CAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGATAAGGATGCAACACTTCAC 391253 ||||| ||||||||| ||||| | || || || ||| | ||||| | || |||||| Sbjct 43334482 CAACTGGAAGATGGACAGACTTTATCTGACTACAACATTCAAAAGGA-GTTACTCTTCAC 43334540 Query 391254 TTAGTATTAAGAC 391266 | || || |||| Sbjct 43334541 CTTGTGTTGAGAC 43334553 >seq9 Length=116251907 Score = 84.2 bits (92), Expect = 9e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||| | ||||| | || || || || || | ||||| ||||| | || Sbjct 47674676 ATGCAGATTTTCATAAAAACTGTTACGGGGAAGACCATCTCACTTGAACTTGAACCCTCG 47674617 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| | ||| | | || | || ||||||||||| ||||||||||||||||| Sbjct 47674616 GATACAAAAGAAAATGTAAAGGTTGAGATCCAAGATAAGGATGGAATTCCTCCTGATCAG 47674557 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| || ||||| | || || ||| ||||||||||||||| | || || || Sbjct 47674556 CAAATATTGATTTTTGCTGGCAAGCAATGGGAAGATGGAAGAACTGCATCTGACTACAAC 47674497 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 47674496 ATTCAAAAGGA 47674486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975636357676028