Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1 86.0 7e-12 >seq1 Length=194850757 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 153288 TACACTCCCTATCAAGCTGAGATATCTCAGGGAAGATTGGAAGCTTTATTCAATTACCAA 153347 || ||||| || ||| | ||||||||||||||||| ||||| |||| |||| ||||| Sbjct 47581331 TATACTCCGTACCAACCAGAGATATCTCAGGGAAGGTTGGAGAGTTTACTCAACTACCAG 47581390 Query 153348 ACGCTCATCACAGAACTTACAGGATTACCAATAGCAAACGCATCTCTATTAGATGAAGCA 153407 || | | || | ||||| | | ||| || ||||| || || ||||| || Sbjct 47581391 ACCATGGTATGTGACATGACAGGCATGGACACAGCCAATGCATCCCTGTTGGATGAGGCG 47581450 Query 153408 ACTGCAGCAGCAGAAGCAATGC 153429 |||||||| ||||||||||||| Sbjct 47581451 ACTGCAGCTGCAGAAGCAATGC 47581472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579189334641440