Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_015323.1 Length=45667 Score E Sequences producing significant alignments: (Bits) Value seq15 89.7 2e-13 >seq15 Length=109054052 Score = 89.7 bits (98), Expect = 2e-13 Identities = 130/182 (71%), Gaps = 4/182 (2%) Strand=Plus/Plus Query 985 TATGGGAGAATCGCTCCTCGCTCGGGATTGGCTGCAAAGTTCTTTATAGATGTGGGGGCG 1044 ||||| ||||| ||||| || || || ||||||||||| | ||| ||||||||||| || Sbjct 46625448 TATGGAAGAATAGCTCCACGTTCTGGCTTGGCTGCAAAATACTTCATAGATGTGGGAGCT 46625507 Query 1045 GGTGTGATAGATGCTGATTATCGCGGTGAAGTGAAGGTG--CTCTTGTTCAATTTTTCGC 1102 ||||| ||||||| |||||| | | ||| || |||| | ||||| |||||| Sbjct 46625508 GGTGTTATAGATGAAGATTATAGAG--GAAATGTTGGTGTTGTATTGTTTAATTTTGGCA 46625565 Query 1103 AACATGCGTTCAACGTTCGGAAGGGAGACCGTATCGCTCAGCTCGTTGTTGAGCGAATCT 1162 || | ||| | || ||||| ||| | || || |||||| || ||| || || | Sbjct 46625566 AAGAAAAGTTTGAAGTCAAAAAGGGTGACAGAATTGCACAGCTCATTTGTGAACGGATTT 46625625 Query 1163 TT 1164 || Sbjct 46625626 TT 46625627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146007180423618