Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq188 138 7e-28 seq7 132 3e-26 seq14 125 5e-24 seq19 107 1e-18 seq11 104 2e-17 seq1 86.0 4e-12 >seq188 Length=611413 Score = 138 bits (152), Expect = 7e-28 Identities = 169/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||||||| | ||| || ||||| ||||| ||||| || Sbjct 73657 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 73716 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || ||||||||||| || | |||||||| | || Sbjct 73717 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGG 73776 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| |||||| ||||| || || || | |||| || ||| | Sbjct 73777 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 73834 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 73835 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 73883 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 73903 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 73962 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | |||||||| | || | ||||||||||| Sbjct 73963 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 74022 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| |||||| | || | |||| || ||| || |||| ||| ||||| || Sbjct 74023 ATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 74082 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 74083 CCGGTCAGGGTCTTCACGAAGATCTGCAT 74111 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || | || ||| Sbjct 74131 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCC 74190 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | |||||||| | || | ||||||||||| Sbjct 74191 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 74250 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||| || |||| ||| ||||| | Sbjct 74251 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCT 74308 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || | || ||||| ||||||||||| Sbjct 74309 TGCCAGTTAAGGTTTTCACGAAGATCTGCAT 74339 >seq7 Length=173684459 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||||||| | ||| || ||||| ||||| ||||| || Sbjct 24645099 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24645040 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| | |||||| || || | |||||||| | || Sbjct 24645039 AGGGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 24644980 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||||||||| |||||| ||||| || || || | |||| || ||| | Sbjct 24644979 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 24644922 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 24644921 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 24644873 >seq14 Length=163896628 Score = 125 bits (138), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 |||||||||| | || |||||||| | ||| |||||| | ||||| ||||| || Sbjct 150521852 CCTCCCCTCAGACGCAGGACCAAGTGCAGAGTGGACTCTTTCGGGATGTTGTAGTCGGAC 150521911 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||| || || || ||||| || || | ||||||| | ||| Sbjct 150521912 AGGGTGCGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGC 150521971 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 ||||||||||| |||||| |||||| | || || | |||| || ||| | Sbjct 150521972 GTGCCCTCCTTGTCCTGGATCTTCGCCTTGACG--TTCTAGATGGTGTCACTGGGCTCCA 150522029 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | |||| ||| ||||| || || || || |||||||| |||||||||||| Sbjct 150522030 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 150522079 >seq19 Length=57279966 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || ||||| || Sbjct 4088674 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAG 4088615 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| |||||| Sbjct 4088614 ATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTC 4088555 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || ||||| |||||||| Sbjct 4088554 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACG 4088495 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 4088494 AAGATCTGCATA 4088483 Score = 105 bits (116), Expect = 4e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| |||||||| ||||| ||||| ||| Sbjct 4088254 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088195 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || ||||| || || || | |||||||| | || Sbjct 4088194 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4088135 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| |||||| | || | |||| || ||| || Sbjct 4088134 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4088075 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || ||||| || || ||||| |||||||| |||||||||||| Sbjct 4088074 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 4088027 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| |||||||| ||||| ||||| ||| Sbjct 4088482 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088423 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 4088422 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4088363 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || ||||| ||||| || || || | || | || ||| | Sbjct 4088362 ATGCCTTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCCA 4088305 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||| ||||| || || ||||| |||||||| |||||||||||| Sbjct 4088304 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 4088255 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||| | || |||| ||| | ||| |||||||| ||||| ||||| ||| Sbjct 4088026 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4087967 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || ||||| || || || | |||||||| | || Sbjct 4087966 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4087907 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || ||||| || ||||| ||||| || || || | || | || ||| | Sbjct 4087906 ATGCCTTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCCA 4087849 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | ||| ||||| || || || || |||||||| ||||||||||| Sbjct 4087848 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4087800 >seq11 Length=87554214 Score = 104 bits (114), Expect = 2e-17 Identities = 151/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| |||||||| ||| | | || ||| Sbjct 46295913 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCTGCTGTCCTCC 46295854 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || | || || || | |||||||| |||| | ||||||||||| Sbjct 46295853 AGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGG 46295794 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| |||||| || || || ||| | || ||| || |||| || ||||| | Sbjct 46295793 ATCTTGGCTTTGAC--ATTCTCGAT-GATGTCCTGGGCTCGACCTCGAGGGCGATGGTCT 46295737 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCA 34980 | ||||| || ||||||||||||||||||| Sbjct 46295736 TGCCCGTCAGGGTCTTCACAAAGATCTGCA 46295707 >seq1 Length=194850757 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/193 (71%), Gaps = 8/193 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||| ||| ||||| ||| || || || |||| ||||||||||| | |||||| Sbjct 37185391 TCTTCCTGGATGTT---GTCTGATAGAGCGCGGCCATCCTCCAGCTGTTTGTCTGCAAAT 37185447 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| || |||| | ||||||||||| | || || |||||| || Sbjct 37185448 ATCAGCCTCTGCTGCTCGGGCGGGATGCCCTCCTTGTCTCGGATTTTGGCTTTGAC--AT 37185505 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||| | || || | | || | | | |||| ||||||| || ||||||| Sbjct 37185506 TCTCGATGGTTTCTCTGGGCTTAGC-TCCAGGATAGTGGTCATTCCCGTCAGGGTCTTCA 37185564 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 37185565 CAAAGATCTGCAT 37185577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324620777074248