Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq1 102 9e-17 seq119 87.8 2e-12 >seq3 Length=155691105 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | ||||| ||||| || | ||||||||||| ||||| || ||| Sbjct 117739710 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATCAGACCTCTCTTCTTT 117739769 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 117739770 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATCCCTTCTACAGCAGCAAAGGCC 117739829 Query 19105 ACTAGTCTTTCTCC 19118 || | ||||| || Sbjct 117739830 ACCACCCTTTCCCC 117739843 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 |||||||||||||| || ||||||||||| ||||||||||| ||||| ||||| ||| Sbjct 117747331 ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGACATGAGAGATA 117747390 Query 19405 AAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTAC 19463 |||| ||| |||||||| || | | | ||||| | | | ||| || ||||| || || Sbjct 117747391 AAATATTTCTCATCTGATGTAAGTCTGTTCCAGTGAGGGAGATCCTTTGATAAGTCAAC 117747449 >seq1 Length=194850757 Score = 102 bits (112), Expect = 9e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||| ||||||||||| | ||| ||| |||| || | |||||| || | Sbjct 145052272 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 145052213 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || |||||||| ||||||||||| | | | | Sbjct 145052212 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGTACAGTTT 145052153 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGG 47218 | || | || |||||||| || ||||||| ||| || | ||| || || Sbjct 145052152 TCTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTCAGGTCATCAGG 145052104 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| |||| ||||| || |||| || || || || || ||||| || ||| Sbjct 145049073 TGAAATTCTCCTGATAAGACTCTGCGAGTATAGATGTTGCTAGTGTACGGTTCAATGGAT 145049014 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || || ||||| | |||| | ||| || Sbjct 145049013 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTTGGCATCGGGGCAAGAAGTAAACTG 145048954 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 145048953 TTTCTTATACCATA 145048940 >seq119 Length=1067461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || || | ||||| || || || | || ||||||||||||| ||| | Sbjct 31901 CCTCATCCCTGCTAATAAGCTCATTGGAGAACGTAAGCCCGGGCATCAGTCCTCGTTTCT 31842 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| || || ||||| || ||||| ||||| || ||||| || || ||||| | Sbjct 31841 TGAGCCAGAAAATCGACGCAAAAGAACCAGAGAAGAAGATGCCTTCCACCGCAGCAAAGG 31782 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 31781 CTACGACGCGTTCTCC 31766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562086027567240