Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq14 185 7e-41 seq12 167 2e-35 seq7 145 6e-29 seq13 120 2e-21 seq5 118 9e-21 seq1 113 4e-19 seq19 109 4e-18 seq17 104 2e-16 seq9 100 2e-15 seq23 96.9 3e-14 seq1615 89.7 4e-12 seq110 87.8 1e-11 seq22 86.0 5e-11 seq3 86.0 5e-11 >seq14 Length=163896628 Score = 185 bits (204), Expect = 7e-41 Identities = 460/696 (66%), Gaps = 2/696 (0%) Strand=Plus/Minus Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 ||||| | || ||||| || |||| ||||| | || || || | || || ||| Sbjct 67901427 CGTCTCCGCACAGCTTGTGAGCGAGCTAAACGTACCCTCTCTTCCAGCACCCAGGCCAGC 67901368 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| ||||||| | | ||||||||| || | |||| | || | | || | Sbjct 67901367 ATTGAGATAGATTCTCTGTATGAGGGAATCGACTTCTATACCTCCATCACCCGTGCTCGA 67901308 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 |||||||| | | |||| || || | || | || || || || ||| | Sbjct 67901307 TTTGAAGAGTTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTCGAGAAAGCCCTT 67901248 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 ||||| | ||| | ||||| || | | ||||| ||||| || || ||||| ||||| Sbjct 67901247 CGAGATGCCAAGTTAGATAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACT 67901188 Query 552144 AGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 |||||||| || |||| | || || | ||| || |||||| ||| || | ||| | Sbjct 67901187 AGAATTCCCAAGATTCAGAAGCTGCTTCAAGACTTCTT-CAATGGAAAAGAACTGAATAA 67901129 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || || || |||||||||||||||||||| || | || ||||| || || || Sbjct 67901128 GAGCATCAACCCTGACGAGGCTGTTGCCTATGGTGCAGCTGTCCAGGCAGCCATCCTGTC 67901069 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 |||| | | ||| || | ||| || | | || | ||||| ||||||||||| || Sbjct 67901068 TGGAGACAAATCTGAGAATGTTCAAGATCTGTTGCTGTTGGATGTCACTCCTCTATCACT 67901009 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | ||||| | ||| || | |||||| || ||| | | |||||||| || || Sbjct 67901008 TGGGATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACTACCATCCC 67900949 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 | || | | | || | || || || || || || ||| || ||||| Sbjct 67900948 TACCAAGCAGACACAGACCTTCACCACCTACTCCGACAACCAGCCTGGCGTGCTCATTCA 67900889 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 ||| |||||| || | | || || ||||| |||| || || | ||| | | Sbjct 67900888 GGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAATCTGCTCGGCAAGTTTGAGCT 67900829 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 ||| || |||||||| || ||||| || || || || ||||| || || ||||| || Sbjct 67900828 CACAGGCATACCTCCTGCACCCCGTGGTGTTCCTCAGATCGAAGTCACATTTGATATTGA 67900769 Query 552563 TGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||||||| ||| | ||||| ||||| ||||| Sbjct 67900768 TGCCAATGGCATTCTTAATGTATCTGCTGTGGATAA 67900733 Score = 174 bits (192), Expect = 1e-37 Identities = 361/532 (68%), Gaps = 4/532 (1%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || || || ||||| | || | || ||||| || Sbjct 67902189 GGCATTGATCTTGGCACCACCTACTCGTGCGTGGGTGTCTTCCAGCACGGGAAAGTGGAG 67902130 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | ||||| || || Sbjct 67902129 ATAATTGCCAATGATCAGGGCAACCGAACCACCCCAAGCTATGTCGCCTTCACTGACACC 67902070 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| | | |||||||| ||||| |||||| | || || ||||| || || Sbjct 67902069 GAACGACTGATCGGTGATGCTGCAAAGAATCAAGTTGCGATGAACCCCACCAACACGGTT 67902010 Query 550178 TTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATG 550237 |||||||| || || || || ||| || ||| ||||| | ||||| | || ||| Sbjct 67902009 TTTGATGCCAAGCGATTGATCGGACACAGATTTGATGATGCTGTCGTTCAATCCGACATG 67901950 Query 550238 AAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCAT 550297 || |||||||| ||| | || |||| | | || | ||| | | ||| || Sbjct 67901949 AAACATTGGCCCTTCATGGTGGTGAATGATGCCGGCAGACCCAAGGTGCAAG-TAGAGTA 67901891 Query 550298 GAAGGATCTGTTAAACAATTTTCACC-AGAACAAATTTCATCTATGGTTTTAATGAAAAT 550356 |||| | || | ||| ||| ||| | | ||||| |||||| | | ||| || Sbjct 67901890 CAAGGGAGAGACGAAAAGTTTCTACCCAGAGGAGGTGTCATCAATGGTTCTGACGAAGAT 67901831 Query 550357 GAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAGTAATAACTGTAC 550415 ||| ||| || || | | || |||| ||||| |||| || | || || | Sbjct 67901830 GAAGGAAATTGCAGAAGCATACCTGGGG-AAGACTGTTACCAATGCTGTGGTCACAGTGC 67901772 Query 550416 CAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGAC 550475 |||| || || |||||||| || |||||||| || |||||||||||| |||||||| | Sbjct 67901771 CAGCTTACTTCAATGACTCTCAGCGTCAAGCAACCAAAGATGCTGGAACCATTGCTGGTC 67901712 Query 550476 TTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 | ||||| || | ||||||||||| || ||||| ||||| |||| ||||| Sbjct 67901711 TCAATGTACTGAGAATTATCAATGAGCCAACTGCCGCTGCTATTGCTTATGG 67901660 >seq12 Length=155355395 Score = 167 bits (184), Expect = 2e-35 Identities = 456/696 (66%), Gaps = 2/696 (0%) Strand=Plus/Minus Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 ||||| | || ||||| || |||| ||||| | || || || | || || | | Sbjct 127663725 CGTCTCCGCACAGCTTGTGAGCGAGCTAAACGTACCCTCTCTTCCAGCACCCAGGCGAGC 127663666 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| ||||||| | | ||||||||| || | |||| | || | || | Sbjct 127663665 ATTGAGATAGATTCTCTCTATGAGGGAATCGACTTCTATACCTCCATCACCCATGCTCGA 127663606 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 |||||||| | | |||| || || | || | || || || || ||| | Sbjct 127663605 TTTGAAGAGTTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTTGAGAAAGCCCTT 127663546 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 ||||| | ||| | ||||| || | | ||||| ||||| || || ||||| ||||| Sbjct 127663545 CGAGATGCCAAGTTAGATAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACT 127663486 Query 552144 AGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 |||||||| || |||| | || || | ||| || |||| | ||| || | ||| | Sbjct 127663485 AGAATTCCCAAGATTCAGAAGCTGCTTCAAGACTTCTT-CAATAGAAAAGAACTGAATAA 127663427 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | || || || |||||||||||||||||||| || | || ||||| || || || Sbjct 127663426 GAGCATCAACCCTGACGAGGCTGTTGCCTATGGTGCAGCTGTCCAGGCAGCCATCCTGTC 127663367 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 |||| | | ||| || | ||| || | | || | ||||| ||||||||||| || Sbjct 127663366 TGGAGACAAATCTGAGAATGTTCAAGATCTGTTGCTGTTGGATGTCACTCCTCTATCACT 127663307 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 ||| | ||||| | ||| || | |||||| || ||| | | |||||||| || || Sbjct 127663306 TGGGATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACTACCATCCC 127663247 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCA 552442 | || | | | || | || || || || || || ||| | ||||| Sbjct 127663246 TACCAAGCAGACACAGACCTTCACCACCTACTCCGACAACCAGCCTGGCATGCTCATTCA 127663187 Query 552443 AATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTT 552502 ||| |||||| || | | || || ||||| |||| || || | ||| | | Sbjct 127663186 GGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAATCTGCTCGGCAAGTTTGAGCT 127663127 Query 552503 AGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGA 552562 ||| || |||||||| || ||||| || || || || ||||| || || ||||| || Sbjct 127663126 CACAGGCATACCTCCTGCACCCCGTGGTGTTCCTCAGATCGAAGTCACATTTGATATTGA 127663067 Query 552563 TGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||||||| ||| | ||||| ||||| ||||| Sbjct 127663066 TGCCAATGGCATTCTTAATGTATCTGCTGTGGATAA 127663031 >seq7 Length=173684459 Score = 145 bits (160), Expect = 6e-29 Identities = 345/517 (67%), Gaps = 6/517 (1%) Strand=Plus/Plus Query 552085 GAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAA 552144 ||||| | ||| | ||||| || | | ||||| ||||| || || ||||| ||||| | Sbjct 89870101 GAGATGCCAAGTTAGATAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACTA 89870160 Query 552145 GAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGAA 552203 ||||||| || |||| | || || | ||| || |||||| ||| || | || | Sbjct 89870161 GAATTCCCAAGATTCAGAAGCTGCTTCAAGACTTCTT-CAATGGAAAAGAACTGGATAAG 89870219 Query 552204 AGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCT 552263 || | || || || |||||||||||||||||||| || | || ||| | || || ||| Sbjct 89870220 AGCATCAACCCTGACGAGGCTGTTGCCTATGGTGCAGCTGTCCAGGCACCCATCCTGTCT 89870279 Query 552264 G--GACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 | |||||| ||| || | ||| || | | || | ||||| ||||||||||| | Sbjct 89870280 GCAGACAAA--TCTGAGAATGTTCAAGATCTGTTGCTGTTGGATGTCACTCCTCTATCAC 89870337 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 |||| | ||||| | ||| || | |||||| || ||| | | |||||||| || | Sbjct 89870338 TTGGGATTGAAACTGCTGGTGGAGTCATGACTGTCCTCATCAAGCGCAATACTACCATCC 89870397 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 || || | | | || | || || || | || || ||| || |||| Sbjct 89870398 CTACCAAGCATACACAGACCTTCACCACCTACTCCAACAACCAGCCTGGCGTGCTCATTC 89870457 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATT 552501 | ||| |||||| || | | || || ||||| |||| || | | ||| | Sbjct 89870458 AGGTTTATGAAGGTGAGCGTGCCATGACCAAGGATAACAATCTGCTCGACAAATTTGAGC 89870517 Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561 | ||| || |||||||| || ||||| || | || || |||| || || ||||| | Sbjct 89870518 TCACAGGCATACCTCCTGCACCCCGTGGTGTTCATCAGATCAAAGTCACATTTGATATTG 89870577 Query 552562 ATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||||||| ||| | ||||| ||||| ||||| Sbjct 89870578 ATGCCAATGGCATTCTTAATGTATCTGCTGTGGATAA 89870614 Score = 134 bits (148), Expect = 1e-25 Identities = 156/209 (75%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||| ||||| ||| || || ||| ||||| |||| || ||| | | |||||| Sbjct 2561111 ACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCATCTTCC 2561170 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||||| || || |||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 2561171 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 2561230 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 ||||| |||||| || |||||||| | | | | ||||| || | || || Sbjct 2561231 ATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGGTCTT- 2561289 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||| ||||| || ||||| Sbjct 2561290 CCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 >seq13 Length=143360832 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||| ||| | ||| || || ||| ||||| |||| || ||| | | |||||| Sbjct 88039086 ACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCC 88039027 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||||| || || |||||||| ||||||||||||||||||||||||||||| ||||| || Sbjct 88039026 AGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 88038967 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATC 563414 |||||| |||||| || |||||||| Sbjct 88038966 ATTTTTGCTTTTACATTTTCTATTGTATC 88038938 >seq5 Length=37992211 Score = 118 bits (130), Expect = 9e-21 Identities = 356/541 (66%), Gaps = 14/541 (3%) Strand=Plus/Minus Query 550004 GATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATT 550063 ||| | || ||||| || ||||| |||||| | | ||| ||||| || | ||| Sbjct 23760707 GATCTTGGCACCACCTACTCTTGTGCTGGTGTCTTCTAGCATGTGAAAGTAGAGAAAATT 23760648 Query 550064 GCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACTGAACAT 550123 |||||||| || || ||| |||| || ||| ||||| | || || || |||||| Sbjct 23760647 GCCAATGAACAGGGCAACTGAACCACCCCAAGCTATGTCACCTTTACTGACACTGAAAGA 23760588 Query 550124 TTAGTTGGTGATGCAGCAAAATATCAAGCC--ACTGGTAATCCTACCAATACTATTTTTG 550181 | | |||||||| ||||| ||||||| | || || ||||||| | |||||| Sbjct 23760587 CTGATCGGTGATGCTGCAAAGAATCAAGCTGTAATG--AACTCTACCAACATGGTTTTTG 23760530 Query 550182 ATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGC 550241 |||| ||| | |||||| | || ||| ||||| | | || | ||| ||| | Sbjct 23760529 ATGCCAAATG----ATTGGATGCAGATTTGATGATGCTGTCATCCAATCCAATAAGAAAC 23760474 Query 550242 ATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAG 550301 | ||||| || | || ||| | | || | || | || ||| || ||| Sbjct 23760473 ACTGGCCCTTTATGGTGGTATATGATGCAGGCAGGCCCAAGATCCAAG-TAGAGTACAAG 23760415 Query 550302 GATCTGTTAAACAATTTTCA-CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAA 550360 | | ||| | ||| | ||||| | | ||||| ||||||| | || || || Sbjct 23760414 GGAAAGACAAAAAGTTTCTATCCAGAGGAGGTGTCATCAATGGTTTGGACAAAGATAAAG 23760355 Query 550361 CAAACAGCCAGTGCTTTTGTTGGTCAAGAAG-TTACGGATGCAGTAATAACTGTACCAGC 550419 |||| || || | |||| |||| | |||| | | || | || || |||| Sbjct 23760354 GAAACTGCAGAAGCCTACCTTGGG-AAGATGGTTACCAACGTTGTGGTCACAGTGTCAGC 23760296 Query 550420 ATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAA 550479 || || | ||||||| | |||||| || ||| |||||||| |||||||| || || Sbjct 23760295 TTACTTCAGTGACTCAGCA--TCAAGCAACCAAATATGCTGGAACCATTGCTGGTCTCAA 23760238 Query 550480 TGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACA 550539 ||| ||| | ||||||||||| || ||||||||||| |||| ||||| || || ||| | Sbjct 23760237 TGTACTTAGAATTATCAATGAGCCAACTGCTGCTGCTATTGCTTATGGCCTAGACAAAAA 23760178 Query 550540 T 550540 | Sbjct 23760177 T 23760177 Score = 91.5 bits (100), Expect = 1e-12 Identities = 182/266 (68%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 552120 ATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTT 552177 ||||| || || | || |||||||||||||| || | || ||| | || | ||| Sbjct 23759751 ATTGTCCTGGTGAGAGGTTCTACAAGAATTCCCAAGACTCA-GAAGCTTCTTCAAGGCTT 23759693 Query 552178 ATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTG 552237 || |||||| ||| || | | | | || | || || |||||||||||||||||||||| Sbjct 23759692 CTT-CAATGGAAAATAACTGAGTAAGAGCATCAACCCTGATGAGGCTGTTGCCTATGGTG 23759634 Query 552238 CCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTAC 552297 | || | || ||||| || || |||||| | | ||| | | ||| || | | | Sbjct 23759633 CAGCTGTCCAGGCAGCCATCCTGTCTGGAGACAAATCTGAGACTGTTCAAGATCTGTTGC 23759574 Query 552298 TTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATC 552357 | | ||||| ||||||||| ||||| | ||||| | ||| || | |||||| | Sbjct 23759573 TGCTGGATGTCACTCCTCTACTGTTTGGTATTGAAACTGCTGGTGGAGTCATGACTGTCC 23759514 Query 552358 TTATCGATAGAAATACTACTATTCCT 552383 | ||| | | |||||| | || ||| Sbjct 23759513 TCATCAAGTGCAATACTTCCATCCCT 23759488 >seq1 Length=194850757 Score = 113 bits (124), Expect = 4e-19 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| || | || || ||||| || || |||||||| || |||||||| || Sbjct 95032450 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGACTCTCAGCGTCAAGCAACC 95032509 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||||| || ||||| || | ||||||||||| || ||||| Sbjct 95032510 AAAGATGCTGGAACCATTGCTGGTCTCAATGTACTGAGAATTATCAATGAGCCAACTGCC 95032569 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 95032570 GCTGCTATTGCTTATGG 95032586 Score = 98.7 bits (108), Expect = 8e-15 Identities = 225/336 (67%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 551904 CGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACT 551963 ||||| | || ||||| || |||| ||||| | || || || | || || ||| Sbjct 95032897 CGTCTCCGCACAGCTTGTGAGCGAGCTAAACGTACCCTCTCTTCCAGCACCCAGGCCAGC 95032956 Query 551964 ATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAA 552023 ||||| ||||||| | | ||||||||| || | |||| | || | | || | Sbjct 95032957 ATTGAGATAGATTCTCTGTATGAGGGAATCGACTTCTATACCTCCATCACCCGTGCTCGA 95033016 Query 552024 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTA 552083 |||||||| | | |||| || || | || | || || || || ||| | Sbjct 95033017 TTTGAAGAGTTGAATGCTGACCTTTTCCGTGGCACCCTGGACCCTGTCGAGAAAGCCCTT 95033076 Query 552084 AGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACA 552143 ||||| | ||| | ||||| || | | ||||| ||||| || || ||||| ||||| Sbjct 95033077 CGAGATGCCAAGTTAGATAAGTCTCAGATCCATGATATTGTCCTGGTGGGTGGTTCTACT 95033136 Query 552144 AGAATTCCTAAAATTCGCGAAATG-TTAAGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 |||||||| || |||| | || || | ||| || |||||| ||| || | ||| | Sbjct 95033137 AGAATTCCCAAGATTCAGAAGCTGCTTCAAGACTTCTT-CAATGGAAAAGAACTGAATAA 95033195 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGC 552238 || | || || ||||||||||||||||||||||| Sbjct 95033196 GAGCATCAACCCTGATGAGGCTGTTGCCTATGGTGC 95033231 >seq19 Length=57279966 Score = 109 bits (120), Expect = 4e-18 Identities = 100/125 (80%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 ||||| ||||| ||| | |||| | ||| ||||| |||| || ||| | |||||| Sbjct 43334545 ACAAGGTGAAGAGTAACTCCTTTTG-AATGTTGTAGTCAGATAAAGTCTGTCCATCTTCC 43334487 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||||| || || ||||| || ||||||||||||||||||||||||||||| ||||| || Sbjct 43334486 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 43334427 Query 563386 ATTTT 563390 ||||| Sbjct 43334426 ATTTT 43334422 Score = 98.7 bits (108), Expect = 8e-15 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| || ||||| ||||| ||| | | ||| || ||||| |||| ||| Sbjct 4088705 CCTCAGACGGAGGACCAGATGCAGGGTGGACTCTTTCTGG--ATGTTGTAGTCAGAAAGA 4088648 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || ||||| || || || || ||||| ||||||||||| Sbjct 4088647 GTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATG 4088588 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTC 563429 ||||| ||||| || || || || || ||| || || ||| || | | || || Sbjct 4088587 CCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTG-GGCTCCACCTC 4088529 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || || ||||| || || || ||||| || |||||| Sbjct 4088528 CAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATA 4088483 >seq17 Length=85008467 Score = 104 bits (114), Expect = 2e-16 Identities = 100/126 (79%), Gaps = 3/126 (2%) Strand=Plus/Minus Query 563266 ACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGA-GTTCTTGAATCTTC 563324 ||||||| ||| || || ||| ||| ||||| |||| |||| || | | |||||| Sbjct 56426644 ACAAGATAAAGAGTGGACTCCTTG--AATGTTGTAGTCAGATAGAAGTCCATCCATCTTC 56426587 Query 563325 AAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTG 563384 ||||| || || ||||| || |||||||||||||||||||||||||| || |||||||| Sbjct 56426586 CAGTTGCTTACCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCATCCTTATCTTG 56426527 Query 563385 AATTTT 563390 ||||| Sbjct 56426526 GATTTT 56426521 >seq9 Length=116251907 Score = 100 bits (110), Expect = 2e-15 Identities = 149/209 (71%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTA-CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || ||||||| || | | |||| | ||| ||||| |||| | ||||||| |||||| Sbjct 47674469 CATGATGAAGATTATCCTCCTTTTG-AATGTTGTAGTCAGATGCAGTTCTTCCATCTTCC 47674527 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 ||| || || |||||||| | | |||||||||||||||||||||| || |||||||| Sbjct 47674528 CATTGCTTGCCAGCAAAAATCAATATTTGCTGATCAGGAGGAATTCCATCCTTATCTTGG 47674587 Query 563386 ATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTTTA 563445 || | ||||| || ||||||| | | | | ||| || | | || || Sbjct 47674588 ATCTCAACCTTTACATTTTCTTTTGTATCCGAGGGTTCAAGTTCAAGTGAGATGGTCTTC 47674647 Query 563446 CCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || |||| |||||| | |||||| ||||| Sbjct 47674648 CCCGTAACAGTTTTTATGAAAATCTGCAT 47674676 >seq23 Length=14171072 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||| || || ||||| | |||||||| || || Sbjct 2141220 GTTACCCATGCAGTTGTCACTGTACCAGCCTACTTCAATGATGCCCAACGTCAGGCAACC 2141279 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 ||||||||||| |||||||||||| |||||| | | || |||||||| || Sbjct 2141280 AAAGATGCTGGTACTATTGCTGGACTGAATGTTATGAGGATCATCAATGAGCC 2141332 >seq1615 Length=15529 Score = 89.7 bits (98), Expect = 4e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| |||| || ||| | | |||||| ||||| || || |||||||| ||||| Sbjct 10808 AATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCT 10749 Query 563352 TTGCTGATCAGGAGGAATTCCT 563373 |||||||||||||||||||||| Sbjct 10748 TTGCTGATCAGGAGGAATTCCT 10727 >seq110 Length=1165285 Score = 87.8 bits (96), Expect = 1e-11 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 563267 CAAGATGAAGGGTA-CTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTTCA 563325 || ||||||| || | | |||| | ||| ||||||||| | ||||||| |||||| Sbjct 970071 CATGATGAAGATTATCCTCCTTTTG-AATGCTGTAATCAGATGCAGTTCTTCCATCTTCC 970129 Query 563326 AGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGA 563385 |||| || || ||||| || | | |||||||||||||||||||||| || ||||||| Sbjct 970130 CGTTGCTTGCCAGCAAAGATCAATATTTGCTGATCAGGAGGAATTCCATCCGTATCTTGG 970189 Query 563386 AT 563387 || Sbjct 970190 AT 970191 >seq22 Length=111700775 Score = 86.0 bits (94), Expect = 5e-11 Identities = 187/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 ||||| ||||| || | ||| ||| | || || | |||||| | | || || ||||| Sbjct 36623428 GATGTCACTCCCCTGTTTCTGGGTATTGAGACTCTAGGAGGTGTCTTCACCAAGCTTATT 36623369 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 | || || || |||||||| ||||| | || |||||||| | | ||| Sbjct 36623368 AACAGGAACAC-ACTATTCCAACCAAAAAGAGCCAGGTGTTTTCTACTGCTGCTGATGGG 36623310 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAAT 552482 || ||| || | ||| || | | | | || || ||| | | || ||| || || Sbjct 36623309 CAGACTCAAGTCAAGATTAAAGTATGTCAGGGGGAGAGAGAGATGGCTGGAGACAACAAA 36623250 Query 552483 CAACTTGGTACTTTTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 | ||||| || || | || || || |||||||| || ||||| ||||| || || || Sbjct 36623249 CTTCTTGG-ACAGTTCACTTTGATTGGAATTCCTCCAGCACCTCGAGGAGTCCCTCAGAT 36623191 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 ||||||||| || ||||| ||||||||||| |||| Sbjct 36623190 TGAAGTTACATTTGATATTGATGCCAATGGGTTTTT 36623155 >seq3 Length=155691105 Score = 86.0 bits (94), Expect = 5e-11 Identities = 82/104 (79%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 552496 TTAATTTAGAA-GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTC 552554 ||| |||||| || |||||||| || ||||| ||||| || || ||||||||||| || Sbjct 20815622 TTATTTTAGATTGGAATTCCTCCAGCACCTCGAGGAGTCCCTCAGATTGAAGTTACATTT 20815563 Query 552555 GATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| ||||||||||| ||| | |||| ||||| ||||| Sbjct 20815562 GATATTGATGCCAATGGGATTGTACATGTTTCTGCTAAAGATAA 20815519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029124601303090