Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq13 147 3e-30 >seq13 Length=143360832 Score = 147 bits (162), Expect = 3e-30 Identities = 179/244 (73%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 2207 ACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGAT 2266 ||||| |||| | || | | || |||| ||| |||||| ||||| ||| ||||||||| Sbjct 32596215 ACTGAGGAACTTGCAAATTACCAGTCACGTTCAGCTGTCTGAGAATAGGACCTGCGAGAT 32596274 Query 2267 CCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTT 2326 || |||||||| ||||| ||| |||| |||||||| || | | ||| || || Sbjct 32596275 TCACCTGACCTGCTCTGTGGAGAATCCAAATGACAATGCCTGGCTTAGGTGGCAGACCCC 32596334 Query 2327 GGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAG 2386 ||| || || |||| | || || |||||||| | ||||||||||||||||||| ||| Sbjct 32596335 GGGAAACACATCTCTAAGTGAACCAAACCTCACTATCTCCTGGGACCCCAGGAACGACAG 32596394 Query 2387 TGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTC 2446 ||| || || ||||| ||||| || || | | ||| | ||| | ||| |||| || || Sbjct 32596395 TGAACACAATTACACCTGCATAGCTGAGACCCCTGCCAACAACTTATCTCTCACTGTGTC 32596454 Query 2447 GGCC 2450 ||| Sbjct 32596455 TGCC 32596458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629257706164360