Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq107 347 1e-90 seq9 143 2e-29 seq13 120 2e-22 seq11 87.8 1e-12 >seq107 Length=1146635 Score = 347 bits (384), Expect = 1e-90 Identities = 490/687 (71%), Gaps = 1/687 (0%) Strand=Plus/Minus Query 29766 GGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTA 29825 |||||||| ||| || || | || |||||||| ||||| || || | ||| | |||||| Sbjct 529488 GGGAAAGG-TCTTGGTTCTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTA 529430 Query 29826 GACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGC 29885 | || || ||||||| || || ||||| || || || | || |||||||| || | Sbjct 529429 AATATGGGCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCAC 529370 Query 29886 CATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTC 29945 |||||||| ||||| | | |||||||||||||| ||||| || || || | |||||| Sbjct 529369 GATCATGTAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTC 529310 Query 29946 CCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACAT 30005 |||||||| ||||| ||||| || || ||||| || | |||||| ||||| || | Sbjct 529309 TCCCGACCTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAG 529250 Query 30006 GGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGAT 30065 || ||||| || || || ||||| || | ||||||||| || ||||| |||| ||| Sbjct 529249 GGCATGGCATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGAT 529190 Query 30066 GATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCAC 30125 ||| | ||||| || |||||| | ||||| || | | || ||||| || || || Sbjct 529189 GATTCTTCTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTAC 529130 Query 30126 CCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185 || || || || |||| | | || |||| ||||| || |||||||||||||| Sbjct 529129 TCCTTGACCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACTG 529070 Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAA 30245 ||| || || || || |||||||| || |||| ||| ||| ||| ||||||| Sbjct 529069 GAAGCCATAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAA 529010 Query 30246 AAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 30305 |||||||| ||| | ||||| |||||||| || || ||||| || || ||||| | Sbjct 529009 AAAGTCTCGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGC 528950 Query 30306 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCT 30365 |||||||| || ||| |||||||||| |||||||| ||| ||||||| || || | Sbjct 528949 ATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACG 528890 Query 30366 CTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACATGGCCTGAGAACCAAACAC 30425 ||||| || || || ||||| | | | |||| ||| |||| || ||||| Sbjct 528889 TTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACAC 528830 Query 30426 GGACAAGACTCCCGTGCCCGTCCTGTC 30452 |||| | || |||||||| | ||| Sbjct 528829 CGACAGGGTGCCGGTGCCCGTGCGGTC 528803 >seq9 Length=116251907 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||||||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 61685973 AGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 61686032 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| |||||||||||||| ||||| || || ||||| || | | Sbjct 61686033 ACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATTCACC 61686092 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| || | || |||||||| || || ||||| || Sbjct 61686093 ACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCATCAG 61686136 Score = 109 bits (120), Expect = 4e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 30158 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30217 |||| ||||| || ||||||||||||||||| || || || || |||||||| || |||| Sbjct 61690123 TGTATTCTGCACCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAGGTCCCCTTCTT 61690182 Query 30218 CCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCT 30277 ||| ||| ||| ||||||||||||||| ||| | ||||| |||||||| | Sbjct 61690183 GTCTGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGATGCATTGGCATCCCAGATTT 61690242 Query 30278 TTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 | || ||||| || || ||||| | |||||||| || Sbjct 61690243 TCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTGGATCC 61690282 >seq13 Length=143360832 Score = 120 bits (132), Expect = 2e-22 Identities = 188/267 (70%), Gaps = 9/267 (3%) Strand=Plus/Plus Query 112072 GCCAGGTGATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATC 112131 || ||| ||| ||||| || || || || || || || ||||| |||||||| || Sbjct 59651781 GCAAGGAAATGTGCTCCTTGTGGCGGTTCCTTGAGTTCTCTACTGAGAACTACGTTGATT 59651840 Query 112132 CTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATC 112191 ||||| | | ||| | |||||| || || ||||||||||| ||||| || ||||| ||| Sbjct 59651841 CTGTCCTTTAAAGGCCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTCCCCATAATC 59651900 Query 112192 ACCACGTTCTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAA 112250 |||| |||||| || ||| ||||| ||||| | |||| | ||| | || | | || Sbjct 59651901 ACCAGGTTCTGTTTACCTTCCACTGATGACGTTGGGGTC-ATTCTCTGGAAATACCTGAA 59651959 Query 112251 ATCTTTGCAAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTC 112310 || | || || |||||||||| || ||||| || ||||||||||||| Sbjct 59651960 TTCGT-------CCTGAGCGGGGGCCACGGCAGGTCCCCGTTCTTGCCGATGCCCATGTT 59652012 Query 112311 TGGACACACGGCCACGATACCGTTCAG 112337 | | |||| || ||||| | ||| || Sbjct 59652013 TTGTGACACAGCGACGATGCAGTTGAG 59652039 >seq11 Length=87554214 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || || ||||| |||| ||| || ||||| | | ||| | |||||| || || Sbjct 1185577 TTGAGTTCTCTACTGAGAACTATGTTGATTCTGTCCTTTAAAGGCCGATTCTTCTCTGGA 1185636 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| ||||| || ||||| ||||||| |||||| || ||| Sbjct 1185637 ATGGAGAACCAGGTCTTCCTCCCCATAATCACCAGGTTCTGTTTACCT 1185684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408601459732493