Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq15 116 1e-21 >seq15 Length=109054052 Score = 116 bits (128), Expect = 1e-21 Identities = 191/273 (70%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 958 TTCCATATGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGA 1017 |||| | |||||| ||||| ||||||||||| | || || || || || || | | | Sbjct 46625434 TTCCTTCTGGATGCTATGGAAGAATAGCTCCACGTTCTGGCTTGGCTGCAAAATACTTCA 46625493 Query 1018 TTGATGTGGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTAT 1077 | |||||||| ||||||||||| ||| ||| | ||| || || ||||||||||| || | Sbjct 46625494 TAGATGTGGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATGTTGGTGTTGTATTGT 46625553 Query 1078 TTAATTTTAGC---GATAAGCGTTTTCATATTTCAAGAGGTGATAGGATTGCTCAGTTAA 1134 |||||||| || || ||| ||| | | || ||||| || ||||| ||| | | Sbjct 46625554 TTAATTTTGGCAAAGAAAAG---TTTGAAGTCAAAAAGGGTGACAGAATTGCACAGCTCA 46625610 Query 1135 TTTGTGAAAAGGCTGTTTTTCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAA 1194 |||||||| | | ||| |||| || || ||| | || || || | |||| Sbjct 46625611 TTTGTGAACGGATTTTTTATCCAGAAATAGAAGAAGTTCAAGTTTTGGATGACACTGAAA 46625670 Query 1195 GGGGTTCTGCAGGATTTGGGTCTAC-CGGAAGA 1226 | ||| | | ||| ||||| ||||| |||||| Sbjct 46625671 GAGGTGCAGGAGGTTTTGGTTCTACTGGGAAGA 46625703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138676262578596