Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq119 109 1e-18 seq3 86.0 1e-11 >seq119 Length=1067461 Score = 109 bits (120), Expect = 1e-18 Identities = 103/126 (82%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 |||||||||||||| ||||| |||||||| ||| ||||| |||||| | || |||||| Sbjct 31778 GTAGCCTTTGCTGCGGTGGAAGGCATCTTCTTCTCTGGTTCTTTTGCGTCGATTTTCTGG 31837 Query 25945 CTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTAC-TTTTCCAACGAGCTCATCAGCAGGG 26002 |||||| | | | |||| ||||||||||| ||| || ||||| ||||| || ||||||| Sbjct 31838 CTCAAG-AAACGAGGACTGATGCCCGGGCT-TACGTTCTCCAATGAGCTTATTAGCAGGG 31895 Query 26003 ACGAGG 26008 | |||| Sbjct 31896 ATGAGG 31901 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 |||||||| ||||| ||||| ||||| || ||||||||||||||||||||||||| ||| Sbjct 32839 AACCCGTTTGACTTCATGGAGAACATTTCACTGGAAGGGAAGACCAACTTCTTTGAGAAG 32898 Query 26305 AGGGTCGGCGACTATCA 26321 || || ||||| ||||| Sbjct 32899 AGAGTGGGCGAGTATCA 32915 >seq3 Length=155691105 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 117739836 GGGTGGTGGCCTTTGCTGCTGTAGAAGGGATTTTCTTCTCGGGATCTTTTGCTGCTATAT 117739777 Query 25940 TCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCA 25999 ||||||| ||| ||| || ||||| || || |||||||| ||||||||||||| Sbjct 117739776 TCTGGCTAAAGAAGAGAGGTCTGATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGCA 117739717 Query 26000 GGGACGA 26006 | || || Sbjct 117739716 GAGATGA 117739710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928807170175040