Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq1 322 6e-83 seq14 116 4e-21 seq12 98.7 1e-15 >seq1 Length=194850757 Score = 322 bits (356), Expect = 6e-83 Identities = 625/913 (68%), Gaps = 11/913 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || |||| ||| |||| ||| || ||| || ||| ||| || || || || Sbjct 62873124 CAGGTGCTCATCCAAACACTGGATGGCAAAGGGGTCGACATCTATGTCAAACTTGTTGGC 62873065 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || ||| || | || |||||||| || Sbjct 62873064 AAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCAAACACGCACAC 62873008 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| || || || || |||||||| | || || || | || || ||||| Sbjct 62873007 GGAGCGCACGTGGACCCCATTACAGGGCGGGTAGGGCGCGCCCTTGGAAACATCGCCTTC 62872948 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| ||||||||||| | ||| |||||||||| ||| || |||| Sbjct 62872947 AAAGTACTGCCACTTGACAAACCTGGCAACCGCGCGCATGTCGGACAAGTCATACTTGTG 62872888 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || | || || | || | |||||||| || | || Sbjct 62872887 GCTCAAGGACAGAGAGCCCGGCACTTCCGGGATCCTTTGGATAGTGGCCCAGAGATACTC 62872828 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT--TAACCTGTCCCGC 160409 || |||||||| ||||||| | ||| ||||| |||| ||| | | | || | | Sbjct 62872827 ATCCGGGCTGTAGGTGTCCTGTGCCCACTCCATAAACTTCTGGATGCTTTCAT-TCTC-C 62872770 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || |||| | || || || | || |||||||| |||||||| ||||| || || Sbjct 62872769 AGCACGTACCTCACATACTCCCTACTGACCACAAAGTAGGCGCTGCCCGAGAAAATAGGA 62872710 Query 160470 ATGGGTATAGGCGG-CGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | | || || || | ||| | | || ||||| | | | ||| ||||| | Sbjct 62872709 GTTTGGAGGGGAGGGCGCGCCTTGGCGGTC-CCTGTGTTTGTGAGCTTTCCGTTCACGAT 62872651 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | ||||| |||||||| | ||| | | |||||| | || || || || | Sbjct 62872650 GACATAACGCTTTTTCCACCTCTCTTCCTTATTGGCTGGCATCCTCTCGGTTTCCAGGTT 62872591 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | ||| || |||| | || || || ||||| || || | || || Sbjct 62872590 GTTTTCGCCCATTAACGACTTGAGCTTCCGGATTATTTCCAGGTTGGTTTTAATAGGGAA 62872531 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || ||||||| | ||| |||| ||||||||| | |||| ||| | || |||||| | Sbjct 62872530 ATCCATACCGCAAAGGTTGATCAAGTACTTCCAGTCCGCGTTCATCTTGTAGAGGTCCTT 62872471 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | || ||||| || || ||||| || || || || || |||| || | Sbjct 62872470 CATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCATAGACCACAGTCTCCAGCTG 62872411 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACAT 160828 ||||||||| ||||||||| |||||| ||| | | |||| ||||| || |||| | Sbjct 62872410 ACTGGCCACGAAGACGTTACTGAAACAGGACGCCAGGCCCATGACCGC-AGCTAGAAAAG 62872352 Query 160829 CTTA-TCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCC 160887 || || | |||| ||||||||| | |||||| | ||||||||| ||||||||||| Sbjct 62872351 ATTCCTCTGACTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATGTAGATGGCCC 62872292 Query 160888 TGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAA 160947 | | | ||| || | ||| || || || ||||| | ||| ||||| || ||||| ||| Sbjct 62872291 TCAAGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACAATAGAATAAGCTATGGGAT 62872232 Query 160948 ACTCGGTCTCCTC 160960 |||| | ||| || Sbjct 62872231 ACTCCGCCTCTTC 62872219 >seq14 Length=163896628 Score = 116 bits (128), Expect = 4e-21 Identities = 158/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | |||| | || |||||| || || |||| ||| |||||||| || Sbjct 106900896 GTTTGCCTGAAGTCCATCACTTTTCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 106900952 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | | ||| || ||| || || || ||| Sbjct 106900953 CCCACCTGAGTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACAGACGTGGTCCCGTTG 106901012 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 ||||| | | | | || |||||||||||||| || || || ||||||||| | || Sbjct 106901013 GGATGTGACAGACTCTCAGTACTGTTCTCAATCCCGGACCCAGCAACCTTCCAGGAGATC 106901072 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||| || || || || || |||||||| || ||||||| Sbjct 106901073 ACAGGGGCTGGCCGGGCAGTGGCAGAGCAAGTGATATTTA 106901112 >seq12 Length=155355395 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 176234 ATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGG 176293 ||| ||| |||| |||| || |||| ||| || | ||||| || |||| | || ||| Sbjct 83509319 ATACTTTGCTAGCTCACTGGGAGAGTTATAGTCTTCCACATGAATGAATGAATCTGCTGG 83509260 Query 176294 AATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAA 176353 || || |||||||| |||| || || || |||| ||| | ||| || | | || | Sbjct 83509259 GATATAATTTTCATAGTTTTCCCTAGATGGCCCTAGAACAACTGGCACAGAGCCAGCCAG 83509200 Query 176354 TAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAA 176413 || | |||| |||||||| |||||| || |||| |||||||||||||||| | Sbjct 83509199 AAAAGCATTATAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCAAAAGAAAG 83509140 Query 176414 ATAGAACTTACA 176425 ||| || ||||| Sbjct 83509139 ATAAAATTTACA 83509128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577195815407160