Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7 118 2e-21 seq13 98.7 2e-15 seq19 86.0 1e-11 seq9 84.2 4e-11 >seq7 Length=173684459 Score = 118 bits (130), Expect = 2e-21 Identities = 145/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || ||| || ||||| ||||| || | ||| || | ||| || || Sbjct 2561123 GTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCATCTTCCAGTTGCTTGCCA 2561182 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 |||||||| | ||| || ||||||||||| |||||||| ||||| || ||||||| |||| Sbjct 2561183 GCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTT 2561242 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| || ||||| || | ||||| || || || || || || || || || ||| Sbjct 2561243 ACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGGTCTT-CCCGTAAGGGTT 2561301 Query 193344 TTTACAAATATTTGCAT 193360 || || || || ||||| Sbjct 2561302 TTCACGAAGATCTGCAT 2561318 >seq13 Length=143360832 Score = 98.7 bits (108), Expect = 2e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || ||| || ||||| ||||| || | ||| || | ||| || || Sbjct 88039074 GTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGCCA 88039015 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 |||||||| | ||| || ||||||||||| |||||||| ||||| || ||||| | |||| Sbjct 88039014 GCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTTGCTTTT 88038955 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| || ||||| || | ||||| | || | || || || || | || ||| Sbjct 88038954 ACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATGATGGTCTTCCCCATAAGGGTT 88038895 Query 193344 TTTACAAATATTTGCAT 193360 || | || || ||||| Sbjct 88038894 TTCATGAAGATCTGCAT 88038878 >seq19 Length=57279966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| |||| || | |||||| || || ||||| Sbjct 4088485 ATACCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCA 4088426 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || |||||| Sbjct 4088425 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGA 4088366 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| || | ||| || || ||| | ||| Sbjct 4088365 GGAATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCGCTGGGCTCC 4088306 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || || ||||| Sbjct 4088305 ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088256 >seq9 Length=116251907 Score = 84.2 bits (92), Expect = 4e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 193165 TAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGG 193224 || |||| || ||| || ||||| ||| ||||| ||| || |||| || || | Sbjct 47674481 TATCCTCCTTTTGAATGTTGTAGTCAGATGCAGTTCTTCCATCTTCCCATTGCTTGCCAG 47674540 Query 193225 CAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTA 193284 ||||||| ||| | || ||||||||||| ||||| || |||||||| || | |||| Sbjct 47674541 CAAAAATCAATATTTGCTGATCAGGAGGAATTCCATCCTTATCTTGGATCTCAACCTTTA 47674600 Query 193285 TATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTT 193344 |||| | ||||| || | |||| ||| || | || || || || || | |||| Sbjct 47674601 CATTTTCTTTTGTATCCGAGGGTTCAAGTTCAAGTGAGATGGTCTTCCCCGTAACAGTTT 47674660 Query 193345 TTACAAATATTTGCATTTT 193363 ||| || || ||||| || Sbjct 47674661 TTATGAAAATCTGCATCTT 47674679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899617952751120