Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq19 98.7 2e-15 seq110 93.3 8e-14 seq112 86.0 1e-11 seq17 86.0 1e-11 >seq19 Length=57279966 Score = 98.7 bits (108), Expect = 2e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 192339 AGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACC 192398 |||| | |||| || || || || |||||||| || || |||| |||| ||| || || Sbjct 43334534 AGTAACTCCTTTTGA-ATGTTGTAGTCAGATAAAGTCTGTCCATCTTCCAGTTGCTTGCC 43334476 Query 192399 AGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 192458 ||||||||| | ||| || |||||||| || |||||||| ||||| || ||||| || Sbjct 43334475 AGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCCTT 43334416 Query 192459 TACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 192518 | |||| ||| | ||| || | ||| || | || | ||||| || || | || || Sbjct 43334415 TGCATTTTCTATTGTATC-GAGGGTTCAACCTTGAGTGCGATGGTGTTCCCCATAAAGGT 43334357 Query 192519 TTTAATAAATATCTGCAT 192536 ||| | || ||||| || Sbjct 43334356 TTTTACGAAGATCTGTAT 43334339 >seq110 Length=1165285 Score = 93.3 bits (102), Expect = 8e-14 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 192361 TAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGA 192420 ||||||||| |||| | |||| ||| ||| || ||||||||||| ||| | || ||| Sbjct 970103 TAATCAGATGCAGTTCTTCCATCTTCCCGTTGCTTGCCAGCAAAGATCAATATTTGCTGA 970162 Query 192421 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGAC 192480 ||||| || ||||| || ||||||| || | | |||||||| | | | ||| || Sbjct 970163 TCAGGAGGAATTCCATCCGTATCTTGGATCTCAACCTTTACATTTTCTTTTGTATCCGAG 970222 Query 192481 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | ||| | || || | ||||| || || || | ||||| || || |||||||| || Sbjct 970223 GGTTCAAGCTCAAGTGAGATGGTCTTCCCCGTAATGGTTTTTATGAAAATCTGCATCTT 970281 >seq112 Length=1107004 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/178 (72%), Gaps = 3/178 (2%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||| | ||| ||| ||| | || || |||||||| || | | || | ||||||| Sbjct 705472 ATGAAGAGTGGGCTCCTTTTGAG-TGTTGTAGTCAGATAAAGTCCATCCACCTTCCAATT 705530 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || ||||||||||| | ||| || ||||||| || |||||||| ||||| || || | Sbjct 705531 GCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGAAGGAATTCCTTCCTTATCCTGGATCT 705590 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 | |||||||| | | | ||| | | |||||| || || | ||||| || || Sbjct 705591 TGGCCTTTACATTTTCTTTTGTATC-AATGGTTCTACCTCAAGTATGATGGTCTTCCC 705647 >seq17 Length=85008467 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/99 (80%), Gaps = 1/99 (1%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATA-ATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 || || || ||||||| | || | | |||| |||| ||| |||||||||||||| | ||| Sbjct 56426619 ATGTTGTAGTCAGATAGAAGTCCATCCATCTTCCAGTTGCTTACCAGCAAAGATCAGTCT 56426560 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTT 192452 || |||||||| || ||||| || |||||||| ||||| Sbjct 56426559 TTGCTGATCAGGAGGAATTCCATCCTTATCTTGGATTTT 56426521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984439119160350