Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq13 118 2e-21 seq9 104 4e-17 >seq7 Length=173684459 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 171851 AAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCG 171910 ||||| || || | || | ||||| ||| || ||| || || || ||||||| | Sbjct 2561101 AAGTCTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCA 2561160 Query 171911 TTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTC 171970 | | || |||| ||| || ||||||||||| | ||| || || ||||| || |||||||| Sbjct 2561161 TCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 2561220 Query 171971 TTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGT 172030 ||||| || ||||| ||||||||| ||| ||||| || | ||| || || || || Sbjct 2561221 CTTATCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGT 2561280 Query 172031 AATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || || || | ||||| | ||| |||||||| Sbjct 2561281 GATGGTCTT-CCCGTAAGGGTTTTCACGAAGATCTGCAT 2561318 >seq13 Length=143360832 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 171872 AGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACC 171931 ||||| ||| || ||| || || || ||||||| ||| | || |||| ||| || || Sbjct 88039075 AGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGCTTGCC 88039016 Query 171932 AGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTT 171991 ||||||||| | ||| || || ||||| || |||||||| ||||| || ||||| ||| Sbjct 88039015 AGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTTGCTTT 88038956 Query 171992 TACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGT 172051 |||||| ||| ||||| || | ||| || | || | ||||| || || | | || Sbjct 88038955 TACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATGATGGTCTTCCCCATAAGGGT 88038896 Query 172052 TTTAATGAATATCTGCAT 172069 ||| ||||| |||||||| Sbjct 88038895 TTTCATGAAGATCTGCAT 88038878 >seq9 Length=116251907 Score = 104 bits (114), Expect = 4e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 171866 ATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTG 171925 ||| | | || |||| || ||| || || || ||| || || | | || ||| |||| Sbjct 47674473 ATGAAGATTATCCTCCTTTTGAATGTTGTAGTCAGATGCAGTTCTTCCATCTTCCCATTG 47674532 Query 171926 TTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTT 171985 || ||||||||||| ||| | || || ||||| || ||||| || |||||||| || | Sbjct 47674533 CTTGCCAGCAAAAATCAATATTTGCTGATCAGGAGGAATTCCATCCTTATCTTGGATCTC 47674592 Query 171986 ATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGT 172045 | |||||||| | | ||||| || | ||| | ||| || | ||||| || || || Sbjct 47674593 AACCTTTACATTTTCTTTTGTATCCGAGGGTTCAAGTTCAAGTGAGATGGTCTTCCCCGT 47674652 Query 172046 TAATGTTTTAATGAATATCTGCATTTT 172072 | ||||| ||||| |||||||| || Sbjct 47674653 AACAGTTTTTATGAAAATCTGCATCTT 47674679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905099330677800