Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq12 89.7 5e-13 seq657 82.4 7e-11 >seq12 Length=155355395 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/217 (71%), Gaps = 9/217 (4%) Strand=Plus/Plus Query 6399 GCCGCCGGTGTGATTGTAATAGCGGCTCATGGTGCGCATGTTCAGGCGGAAGATCTTCT- 6457 ||||| | | || ||||| |||| || || |||| || ||||| ||||||| ||| || Sbjct 20283681 GCCGC-GCTCTGGTTGTAGTAGCCGCGCAGGGTGTTCAGGTTCACGCGGAAGGTCTGCTC 20283739 Query 6458 GCGTCTCCCGCGCGTTCT---TGTTCTGATCGGTCCAGTACTTCGTCTCGTTGGTCACGT 6514 | | ||| | |||||| ||||| | || |||||||| || ||| | Sbjct 20283740 GTGGCTCTTG-GCGTTCCGCGTGTTCAGGTC---CCAGTACTCCGGCTCCACCTGCCGCA 20283795 Query 6515 TCCACGGCACGCTGGCGACCACCCGCGGGTCGGTGGAGTTGCTGTCGAAGCGGACGATCT 6574 |||||||| | | | ||| || ||||| || || |||||||||||| |||| || Sbjct 20283796 TCCACGGCGCCCGCGGCTCCATCCTCGGGTTCTCGGCGTCGCTGTCGAAGCGCACGAACT 20283855 Query 6575 CCGTGTCGTCCACGTAGCCCACGACCAGGTACCGGGG 6611 |||||||||||||||||| || | |||||| |||| Sbjct 20283856 GCGTGTCGTCCACGTAGCCGACTTCGAGGTACTGGGG 20283892 >seq657 Length=82933 Score = 82.4 bits (90), Expect = 7e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 43867 TCCGCTGGAAGGTGCCGTCGAGGGCGGCCACGATGACGATCTTCCCCGCGTTCGCCATGT 43926 ||| ||||||||| || || ||||| ||||| || || ||||||| | ||| |||||| Sbjct 13607 TCCTCTGGAAGGTTCCATCCAGGGCAGCCACAATCACCGTCTTCCCGGAGTTGGCCATGG 13666 Query 43927 CCTCGCAGAACTCCACTAGGTCG 43949 |||||||||||||||| | |||| Sbjct 13667 CCTCGCAGAACTCCACGATGTCG 13689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476022314364680