Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq188 152 3e-32 seq7 149 4e-31 seq19 134 9e-27 seq14 132 3e-26 seq11 129 4e-25 seq121 100 2e-16 seq13 93.3 3e-14 >seq188 Length=611413 Score = 152 bits (168), Expect = 3e-32 Identities = 173/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||| ||| | |||| ||||||||| ||||| ||||| || Sbjct 73657 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 73716 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| ||||| || ||||| | |||||||| | || Sbjct 73717 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGG 73776 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 73777 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 73834 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 73835 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 73884 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 73899 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 73958 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| | |||||||| | || | ||||||||||| Sbjct 73959 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 74018 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | ||| ||| ||| || || | ||| ||||| Sbjct 74019 CTGGATCTTCGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 74078 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| || || |||||||| || |||||||||||| Sbjct 74079 CTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 74112 Score = 134 bits (148), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| |||||||| | |||| ||||||||| ||||| ||||| || ||| |||| | || Sbjct 74127 CAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 74186 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| |||||||| | |||||||| | || | ||||||||||| Sbjct 74187 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTC 74246 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 74247 CTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 74304 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || | ||| || || ||||||||||| Sbjct 74305 GTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCAT 74339 >seq7 Length=173684459 Score = 149 bits (164), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||| ||| | |||| ||||||||| ||||| ||||| || Sbjct 24645099 CCTCCCCTCAGACGCAGGACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 24645040 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| || || | ||| |||||||| | |||||||| | || Sbjct 24645039 AGGGTGCGGCCATCTTCCAGCTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 24644980 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 24644979 ATGCCCTCCTTGTCCTGGATCTTCGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 24644922 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| || |||||||||||| Sbjct 24644921 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 24644872 Score = 102 bits (112), Expect = 5e-17 Identities = 157/223 (70%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 |||| || ||||||| || |||||| |||||||| ||||| |||| | | || Sbjct 2561105 CTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCA 2561164 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || ||||||||||| || || || ||||||| |||||| || | || | || ||||| Sbjct 2561165 TCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 2561224 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | ||||| ||| || | |||| | || || || || || | || ||| Sbjct 2561225 TCCTGGATTTTGGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATG 2561284 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGG 34985 ||| ||||||| ||||| || || ||||||||||| | |||| Sbjct 2561285 GTC-TTCCCGTAAGGGTTTTCACGAAGATCTGCATCCTGGTGG 2561326 >seq19 Length=57279966 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 4088254 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088195 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||||||||| || | |||||||| | || Sbjct 4088194 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4088135 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || |||||| | || | ||| ||| ||| || Sbjct 4088134 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4088075 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | || |||||||| || ||||||||||| || ||||||||||| Sbjct 4088074 TCCAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088028 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||| || | |||| ||| ||||| ||||| ||||| || Sbjct 4088710 CCACCCCTCAGACGGAGGACCAGATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088651 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||||||||| || | |||||||| | || Sbjct 4088650 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGA 4088591 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || ||||| || | || || |||||| | || | ||| ||| ||| || Sbjct 4088590 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4088531 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 4088530 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088484 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 4088026 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4087967 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||||||||| || | |||||||| | || Sbjct 4087966 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGA 4087907 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || ||||| || || || | || ||| ||| | Sbjct 4087906 ATGCCTTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCCA 4087849 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 4087848 CCTCCAAGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 4087800 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | |||||||||||| | |||| ||| ||||| ||||| ||||| || Sbjct 4088482 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 4088423 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 4088422 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4088363 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || ||||| || | || || ||||| || || || | || ||| ||| | Sbjct 4088362 ATGCCTTCCTTATCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCCA 4088305 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 4088304 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 4088256 >seq14 Length=163896628 Score = 132 bits (146), Expect = 3e-26 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | |||||||| ||| | ||| ||| ||| | ||||| ||||| || Sbjct 150521852 CCTCCCCTCAGACGCAGGACCAAGTGCAGAGTGGACTCTTTCGGGATGTTGTAGTCGGAC 150521911 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||||| | ||| Sbjct 150521912 AGGGTGCGTCCATCTTCCAGGTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTAAGGGGGC 150521971 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 ||||||||||| | || || |||||| | || || | ||| ||| ||| | Sbjct 150521972 GTGCCCTCCTTGTCCTGGATCTTCGCCTTGACG--TTCTAGATGGTGTCACTGGGCTCCA 150522029 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 150522030 CCTCGAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 150522078 >seq11 Length=87554214 Score = 129 bits (142), Expect = 4e-25 Identities = 161/215 (75%), Gaps = 7/215 (3%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGC-GCTCAT 34823 ||| |||||||| | |||| ||| ||||| ||||| |||||||| ||| ||| ||| | Sbjct 46295917 CAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCTGCTG-T 46295859 Query 34824 CGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGT 34883 | ||||| || || || |||| ||||| | |||||||| |||| | |||||||||| Sbjct 46295858 CCTCCAGCTGTTTGCCCACGAAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGT 46295799 Query 34884 CGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 | | || || |||||| || || || ||| ||| |||||| || | || || Sbjct 46295798 CTTGGATCTTGGCTTTGAC--ATTCTCGAT-GATGTCCTGGGCTCGACCTCGAGGGCGAT 46295742 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 |||||| ||||| |||||||| ||||||||||||| Sbjct 46295741 GGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCA 46295707 >seq121 Length=1052913 Score = 100 bits (110), Expect = 2e-16 Identities = 164/237 (69%), Gaps = 11/237 (5%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||| |||||| | |||||||||||| | |||| |||| |||| | ||| ||| | | Sbjct 436985 CCTGCCCTCAGACGCAGGACCAGGTGCAGGGTGGGCTCCGTCTGGAGGTTGTAG-CTGGC 437043 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG-- 34868 ||| |||| |||| ||||| ||||| ||||| |||||||| | ||||||| || | Sbjct 437044 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTTGTGTGTG 437103 Query 34869 --------GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATT 34920 | | ||||||||||| | || || | |||| || || | ||| Sbjct 437104 TGTGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTCGACGTTCGCGATGGTGTCAGC 437163 Query 34921 GGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||| || || | ||| | |||||| ||||| | ||| || || ||||||||||| Sbjct 437164 GGGCTCCACCTCGAGGGTGACGGTCTTGCCCGTTAAGGTTTTCACGAAGATCTGCAT 437220 >seq13 Length=143360832 Score = 93.3 bits (102), Expect = 3e-14 Identities = 156/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 34760 AACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGC 34819 || |||| || |||||| || |||||| |||||||| ||||| |||| | || Sbjct 88039095 AATCTCAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGT 88039036 Query 34820 TCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCC 34879 |||| ||||||||||| || || || ||||||| |||||| || | || | || ||| Sbjct 88039035 CCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 88038976 Query 34880 TTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTT 34939 || || | |||||| ||| || | |||| | || || || || | | | Sbjct 88038975 TTATCCTGGATTTTTGCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATG 88038916 Query 34940 ATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATAGTGG 34985 |||||||| ||| | ||||| || | ||||||||||| | |||| Sbjct 88038915 ATGGTCTTCCCCATAAGGGTTTTCATGAAGATCTGCATCCTGGTGG 88038870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325679935236179