Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq188 102 7e-17 seq13 86.0 5e-12 >seq188 Length=611413 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || || || ||||| ||||| ||||| ||||| ||| |||| |||| | | Sbjct 74340 AATGCAGATCTTCGTGAAAACCTTAACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 74281 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || |||||| || || || ||| | ||| || || Sbjct 74280 TGACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCA 74221 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || |||||||| |||| | || || | |||||||| Sbjct 74220 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAA 74161 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||| || |||||||| || ||||| ||||| || Sbjct 74160 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 74127 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | || ||||| ||||| ||| |||| |||| | | Sbjct 74111 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 74052 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||| || || || ||| | ||| || ||| Sbjct 74051 GACACCATCGAGAACGTCAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 73992 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || |||||||| |||| | || || | ||||||||| Sbjct 73991 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGACGGCCGCACCCTGTCCGACTACAAC 73932 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || || |||||||| || ||||| ||||| || Sbjct 73931 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 73899 >seq13 Length=143360832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 107631 GTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTAT 107690 |||||| ||| || ||||| ||||| | || |||||||| ||||| |||| | Sbjct 88038953 GTAAAAGCAAAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTT 88039012 Query 107691 GCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCT 107750 || || || || ||||| || | || | | |||||||||||||||||||||||| Sbjct 88039013 GCTGGCAAGCAACTGGAAGATGGACGGACTTTATCTGACTACAACATTCAAAAGGAGTCT 88039072 Query 107751 ACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || ||| | ||||||||||| || ||||| Sbjct 88039073 ACTCCTCACCTTGTGTTGAGATTTCGTGGGGG 88039104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398861044491049