Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq188 114 1e-20 seq7 111 1e-19 seq13 100 2e-16 seq15 91.5 1e-13 seq19 82.4 6e-11 >seq188 Length=611413 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| || || ||||| || || || ||||| || || | | |||||| Sbjct 74125 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 74184 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| ||| | |||| || ||||| || || || || ||||| ||| Sbjct 74185 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTG 74244 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | ||| |||||| | || | |||||| | || || || || || || Sbjct 74245 TCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATG 74304 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||||||||||||||| || || ||||||||| Sbjct 74305 GTCTTGCCAGTTAAGGTTTTCACGAAGATCTGCATT 74340 >seq7 Length=173684459 Score = 111 bits (122), Expect = 1e-19 Identities = 147/203 (72%), Gaps = 1/203 (0%) Strand=Plus/Plus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||||| || || || ||||||||||| || || | | || | ||| || ||||| Sbjct 2561117 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCATCCATCTTCCAGTTGC 2561176 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | |||| |||||||||||| || ||||| || || || || || | ||| Sbjct 2561177 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTG 2561236 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| |||||| || || || |||| || || || || || || || || || Sbjct 2561237 GCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGCGTGATGGTCTT-CCCGTA 2561295 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||| || || |||||||| Sbjct 2561296 AGGGTTTTCACGAAGATCTGCAT 2561318 >seq13 Length=143360832 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 ||| | || || || ||||||||||| || || | | || || ||| || ||||| Sbjct 88039080 TGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCCGTCCATCTTCCAGTTGC 88039021 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||||||| | |||| |||||||||||| || ||||| || || || || || | |||| Sbjct 88039020 TTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTT 88038961 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| |||||| || || || |||| || | || | || || || || | Sbjct 88038960 GCTTTTACATTTTCTATTGTATCCGAGGGTTCAACCTTGAGCATGATGGTCTTCCCCATA 88038901 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||| | || |||||||| Sbjct 88038900 AGGGTTTTCATGAAGATCTGCAT 88038878 >seq15 Length=109054052 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 29562 TCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAAT 29621 ||| |||| | ||| || || || || ||||| || || || ||||| || || | | Sbjct 17280342 TCCTCTCAGGCACAGGACTAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAA 17280283 Query 29622 GGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCC--GGCGGA 29679 ||| | ||| || || ||||| |||| | ||||| |||| || || |||| Sbjct 17280282 GGTACATCCATCTTCCAGGTGTTTCCCAGTGAAGATCAACCTTTTCTAGTCACAGGCG-- 17280225 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | | |||| ||||| | || || |||||| | | || Sbjct 17280224 ATGCCTTCTTTGTCTTGGA-TCTTTGCCTGACATTCTCAACGGTGTCACTGGGCTTAACC 17280166 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || ||||||||||||||| |||| | || || |||||| Sbjct 17280165 TCAAGGGTGATGGTTTTGCCAGTTAAGATTTTCAGGAAGATTTGCATT 17280118 >seq19 Length=57279966 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/193 (71%), Gaps = 5/193 (3%) Strand=Plus/Minus Query 29596 TCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATAT 29655 || ||||||||||| || || | | || | ||| || ||||| ||||||||| | Sbjct 43334528 TCCTTTTGAATGTTGTAGTCAGATAAAGTCTGTCCATCTTCCAGTTGCTTGCCAGCAAAG 43334469 Query 29656 ATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG--TTTGACAG 29713 |||| |||||||||||| || ||||| || || || || || ||||| | |||| || Sbjct 43334468 ATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG-GATTTTGGCCTTTG-CAT 43334411 Query 29714 TTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAA 29773 |||||| || || || |||| || | || | || || || || | |||||||| | Sbjct 43334410 TTTCTATTGTATC-GAGGGTTCAACCTTGAGTGCGATGGTGTTCCCCATAAAGGTTTTTA 43334352 Query 29774 CAAATATCTGCAT 29786 | || ||||| || Sbjct 43334351 CGAAGATCTGTAT 43334339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385203983961981