Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq12 114 2e-20 seq15 98.7 2e-15 >seq12 Length=155355395 Score = 114 bits (126), Expect = 2e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438 || ||||||||||||| | |||||||||| | ||||| || || ||||||||||| || Sbjct 66863387 GCTTTATGGTGGTACTTTGTATCTAAAGGAGTTGAATATTTGGACACAGTGTTTTTTATC 66863328 Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498 ||| |||| || ||||| ||| || || || ||||| || || | ||| |||||| Sbjct 66863327 CTTCGGAAGAAAAACAATCAAGTTTCTTTCCTTCATGTATACCACCACTGTACCATGTTT 66863268 Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539 || || | ||| | || ||||||||| ||||||| || || Sbjct 66863267 ACATTGTGGTGGATTGGGATTAAATGGGTTGCAGGGGGACA 66863227 >seq15 Length=109054052 Score = 98.7 bits (108), Expect = 2e-15 Identities = 210/314 (67%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 48960 TCATCCAAAGAAGGTACTTCTCTTATTTCTGGATATGCTATTTTTTCGAATATGATTTGA 49019 ||||||||| | |||||| |||||||||||| || ||| | |||| || Sbjct 46625662 TCATCCAAAACTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATGAGCTGT 46625603 Query 49020 GCTATTCTATCACCCTTGGATACATTAAATGGTATAGAACTGAAATTAAATAATAGAACA 49079 || ||||| |||||||| || | ||| | | |||||||| |||| |||| Sbjct 46625602 GCAATTCTGTCACCCTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAATACAACA 46625543 Query 49080 CCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACGTCTATAAAATAATTA 49139 || || || |||||||| ||| || || |||||||| || || ||||| || || || Sbjct 46625542 CCAACATTTCCTCTATAATCTTCATCTATAACACCAGCTCCCACATCTATGAAGTATTTT 46625483 Query 49140 TAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTAGGTATTTTTATAATT 49199 ||| | || || | ||||||||||| || ||| ||||| ||| | ||| Sbjct 46625482 GCAGCCAAGCCAGAACGTGGAGCTATTCTTCCATAGCATCCAGAAGGAAGAGCTATCTGA 46625423 Query 49200 ATATCTGTTTTTATTAATTCCTTATCCATAGGTTCTATTACATAATCATACGCGCTATAT 49259 || || ||||| | | | || ||||||||| || ||||||||| || || || Sbjct 46625422 ATGTCCGTTTTCACAATGGCTTTCTCCATAGGTGGTACGGTATAATCATAAGCACTGTAC 46625363 Query 49260 AAGTCATAACCAGC 49273 | ||| || || || Sbjct 46625362 AGGTCGTAGCCCGC 46625349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903374600553760