Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_024486.1 Length=43734 Score E Sequences producing significant alignments: (Bits) Value seq15 80.6 7e-11 >seq15 Length=109054052 Score = 80.6 bits (88), Expect = 7e-11 Identities = 111/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 1336 TTGTTAGCACTGACATTTCTATAG-TCTTACCTCGTGGTTGTTACGGCAGAATAGCTCCA 1394 |||| | || |||||| |||| |||| | || ||| || || || |||||||||||| Sbjct 46625407 TTGTGAAAACGGACATTCAGATAGCTCTTCCTTC-TGGATGCTATGGAAGAATAGCTCCA 46625465 Query 1395 AGATCCGGTCTAGCGGCAAAGTATTCAATTGATGTGGGCGCTGGAGTTATTGACCCTGAT 1454 | || || | || ||||| || | || |||||||| ||||| ||||| || ||| Sbjct 46625466 CGTTCTGGCTTGGCTGCAAAATACTTCATAGATGTGGGAGCTGGTGTTATAGATGAAGAT 46625525 Query 1455 TATCGTGGAAGTATCAGTGTTGTTTTATTTAAT 1487 ||| | |||| | | ||||||| || |||||| Sbjct 46625526 TATAGAGGAAATGTTGGTGTTGTATTGTTTAAT 46625558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139821818488032