Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq19 158 1e-33 seq188 156 4e-33 seq7 143 3e-29 seq14 125 7e-24 seq11 122 8e-23 seq1 113 4e-20 seq15 109 5e-19 seq2 98.7 1e-15 seq121 95.1 1e-14 >seq19 Length=57279966 Score = 158 bits (174), Expect = 1e-33 Identities = 156/199 (78%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 4087997 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 4087939 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| ||||||||||||||| ||||||||||| || |||||| || Sbjct 4087938 CGGCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 4087879 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | |||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 4087878 TGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTCAGGG 4087819 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4087818 TCTTCACGAAGATCTGCAT 4087800 Score = 141 bits (156), Expect = 9e-29 Identities = 156/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||||||||| || ||||| || | ||| | | | || || |||| Sbjct 4088687 ATGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCT 4088629 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | ||||||| ||||||||| ||||| ||||||||||| || ||||| Sbjct 4088628 GCTTGCCGGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCT 4088569 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||||| | ||| | ||||| |||||||||| || | ||||| ||| ||||| | Sbjct 4088568 TGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAG 4088509 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || ||||| |||||||| Sbjct 4088508 TGAGGGTCTTCACGAAGATCTGCAT 4088484 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 4088225 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 4088167 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| ||||||||||||||| ||||||||||| || |||||| || Sbjct 4088166 CGGCGAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 4088107 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||||||||| || | |||| ||| ||||| || || | Sbjct 4088106 TGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCAGTGAGGG 4088047 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4088046 TCTTCACGAAGATCTGCAT 4088028 Score = 140 bits (154), Expect = 3e-28 Identities = 152/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 4088453 GGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 4088395 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| ||||| ||||||||||| || |||||| || Sbjct 4088394 CAGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 4088335 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | |||||| |||||||||| || | ||||| ||| ||||| || || | Sbjct 4088334 TGACATTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 4088275 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4088274 TCTTCACGAAGATCTGCAT 4088256 >seq188 Length=611413 Score = 156 bits (172), Expect = 4e-33 Identities = 161/208 (77%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || ||| | | | || || || Sbjct 73678 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAG 73736 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| |||||||||||| |||||||| |||||||| ||| Sbjct 73737 CTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGAT 73796 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| |||||||||| |||| ||||| ||| ||||| Sbjct 73797 CTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCC 73856 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||| || || ||||| ||||||||| Sbjct 73857 GGTCAGGGTCTTCACGAAGATCTGCATG 73884 Score = 156 bits (172), Expect = 4e-33 Identities = 154/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||| || ||||||||||| Sbjct 73914 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCC 73973 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| |||||||| |||||||| |||||| ||| Sbjct 73974 GGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTCGCCTT 74033 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| |||| ||||| ||| ||||||||||| || Sbjct 74034 GACGTTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 74093 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 74094 CTTCACGAAGATCTGCATG 74112 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| || ||| ||| || ||||||||||| Sbjct 74142 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCTTCCAGCTGCTTGCC 74201 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||||||| |||||||| |||||||| ||||||| ||| Sbjct 74202 GGCAAAGATCAGCCTCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 74261 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| |||||||||| |||| ||||| ||| ||||| || | || Sbjct 74262 GACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTTAAGGT 74321 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| |||||||| Sbjct 74322 TTTCACGAAGATCTGCAT 74339 >seq7 Length=173684459 Score = 143 bits (158), Expect = 3e-29 Identities = 158/208 (76%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||| ||||| || ||||| ||| || ||| | | | || || || Sbjct 24645078 AAGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAG 24645020 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| |||| || | || |||| ||||||||| || |||||||| |||||||| ||| Sbjct 24645019 CTGTTTGCTGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGAT 24644960 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||| | ||||| |||||||||| |||| ||||| ||| ||||| Sbjct 24644959 CTTCGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCC 24644900 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 |||||| || || ||||| ||||||||| Sbjct 24644899 GGTCAGGGTCTTCACGAAGATCTGCATG 24644872 >seq14 Length=163896628 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||| | || ||||| ||| || ||| | | | || || || |||||||| Sbjct 150521882 GTGGACTCTTTCGGGATGTTGTAGTCGGACAGGGTGCGTCCA-TCTTCCAGGTGCTTGCC 150521940 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||||| || || |||| |||||||| |||||| ||| Sbjct 150521941 AGCAAAGATCAGCCTCTGCTGGTAAGGGGGCGTGCCCTCCTTGTCCTGGATCTTCGCCTT 150522000 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| |||||||||| |||| ||||| ||| ||||||||||| || Sbjct 150522001 GACGTTCTAGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCGGTCAGGGT 150522060 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 150522061 CTTCACGAAGATCTGCAT 150522078 >seq11 Length=87554214 Score = 122 bits (134), Expect = 8e-23 Identities = 146/197 (74%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| |||||| ||||| ||||| Sbjct 46295902 GGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCTGCTGTCCTCCAGCTGTTTGCC 46295843 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | || |||| || | ||||||||| || |||||||| |||||||| |||||| || Sbjct 46295842 CACGAAAATCAGACACTGCTGGTCAGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCTTT 46295783 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||| ||||||| || |||| || || ||| ||||| ||||| || Sbjct 46295782 GACATTCTCGATGATGTC-CTGGGCTCGACCTCGAGGGCGATGGTCTTGCCCGTCAGGGT 46295724 Query 133643 TTTTACGAAAATCTGCA 133659 || || || ||||||| Sbjct 46295723 CTTCACAAAGATCTGCA 46295707 >seq1 Length=194850757 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || ||||| | ||| | | | || | |||||||||| Sbjct 134277709 GGTGGACTCTTTCTGGATGTTATAATCAGAAAGAGTGTGGCTA-TCTTTCAGCTGCTTGC 134277767 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || ||||||||| || |||||| ||||||||||||| ||| || |||||| | Sbjct 134277768 CTGCAAAAATGAGCCTCTCCTGGTCAGGAGGGATGCCTTTCTTATCTTGGATCTTGGCCA 134277827 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | || | |||||||||| || ||||| ||| ||||| ||||| | Sbjct 134277828 TGACATTCTCCATGATGCCATTGGGCTCCACCTCCTGGGTGATGGTCTTGCCAGTCAGGG 134277887 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 134277888 TCTTCACGAAGATTTGCAT 134277906 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | |||||| ||||||||| ||| ||| |||||||| Sbjct 99331665 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCTTCTGCTGGTCAGGAAGGAAGCCTTCCTCA 99331724 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || || ||| ||||| | || | |||||| ||| |||||| || | | ||| | Sbjct 99331725 TCCTGGACCTTCGCCTTGACATTCTTGATGGTGTCGCTGGACTCCACCTCCAGGCTGATG 99331784 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || |||| ||||||||| || ||||| ||||| || Sbjct 99331785 GTCTTGCTGGTCAGAGTCTTCACGAAGATCTGTAT 99331819 >seq15 Length=109054052 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 || |||||||||||| || |||||||| ||| | | | | | |||||||||| Sbjct 79400551 GGAGGACTCTTTCTGGATCTTGTAATCAGAAGGAGTGCGGCCATCTCAC-AGCTGCTTGC 79400609 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||| || |||| ||||||||| | || |||||| || Sbjct 79400610 CTGCAAAGATGAGCCTCTGCTGCTCAGGAGCGATGCCTTCTGTATCCTGGATCTTAGCCT 79400669 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||| | |||||||||| || | |||| ||| | || |||||||| Sbjct 79400670 TGACATTCTCAATGGTGTTGCTGGGCTCCACCTCCAGAGTGATGGTCTGGCTGGTCAGAG 79400729 Query 133642 TTTTTACGAAAATCTGCAT 133660 | |||| ||| || ||||| Sbjct 79400730 TCTTTATGAAGATTTGCAT 79400748 >seq2 Length=174332312 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | || | | | || || |||||||||| Sbjct 24775711 GGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCA-TCTTCCAGCTGCTTGC 24775653 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| ||||||||| ||||| ||||||||||| || |||||| || Sbjct 24775652 CAGCGAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGGATCTTGGCCT 24775593 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGT 133627 |||| | || | |||||| || |||||| | || ||||| ||| Sbjct 24775592 TGAGATTGTCGATGGTGTCGCTGCTCTCCACCTAGAGGGTGATGGT 24775547 >seq121 Length=1052913 Score = 95.1 bits (104), Expect = 1e-14 Identities = 119/165 (72%), Gaps = 10/165 (6%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGT----------CGGGAGGGAT 133555 || || ||||||||||| || | || |||| |||||||| ||| ||||| Sbjct 437056 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTTGTGTGTGTGTGGGGGGGAT 437115 Query 133556 GCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTC 133615 ||| |||||||| |||||| || || | | | | ||||| | ||||||||| || Sbjct 437116 GCCCTCCTTGTCCTGGATCTTCGCCTCGACGTTCGCGATGGTGTCAGCGGGCTCCACCTC 437175 Query 133616 GACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||||||| ||||| || | ||||| ||||| |||||||| Sbjct 437176 GAGGGTGACGGTCTTGCCCGTTAAGGTTTTCACGAAGATCTGCAT 437220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401215414840