Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq1 219 5e-52 seq14 197 2e-45 >seq1 Length=194850757 Score = 219 bits (242), Expect = 5e-52 Identities = 612/931 (66%), Gaps = 15/931 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | || | ||| || | |||||||| || || ||| || Sbjct 62873140 CCAGGGCTTTATGCCTCAGGTGCTCATCCAAACACTGGATGGCAAAGGGGTCGACATCTA 62873081 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || |||| ||| ||| || || ||||| || | || || | Sbjct 62873080 TGTCAAACTTGTTGGCAAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAG 62873024 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| |||||||||||||| |||||||| || || | || ||||| || | || || | Sbjct 62873023 CTCCAAACACGCACACGGAGCGCACGTGGACCCCATTACAGGGCGGGTAGGGCGCGCCCT 62872964 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | ||||| || || |||| |||||||| || ||||| | | || ||||||||| Sbjct 62872963 TGGAAACATCGCCTTCAAAGTACTGCCACTTGACAAACCTGGCAACCGCGCGCATGTCGG 62872904 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||| ||||||| || | || || | || || || |||| | || || | | Sbjct 62872903 ACAAGTCATACTTGT-GGCTCAAGGACAGAGAGCCCGGCACTTCCGGGATCCTTTGGATA 62872845 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || || || || || || |||| | ||||||||| |||| | | Sbjct 62872844 GTGGCCCAGAGATACTCATCCGGGCTGTAGGTGTCCTGTGCCCACTCCATAAACTTCTGG 62872785 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| || | || | ||| || || ||| | || | |||||| ||||| Sbjct 62872784 ATGCTTTCATTCTCCAGCACGTACCTCACATACTCCCTACTGACCACAAAGTAGGCGCTG 62872725 Query 162478 CC--AGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 || |||||| | | || | | | |||||| || | ||| | || ||||| | Sbjct 62872724 CCCGAGAAAATAGGAGTTT--GGAGGGGAGGGCGCGCCTTGGCGGTCCCTGTGTTTGTGA 62872667 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | |||| | |||| || | | ||| ||||||| | |||| ||| | | Sbjct 62872666 GCTTTCCGTTCACGATGACATAACGCTTTTTCCACCTCTCTTCCTTATTGGCTGGCATCC 62872607 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 ||||| || || |||| ||| || | ||| |||| || | || || || | Sbjct 62872606 TCTCGGTTTCCAGGTTGTTTTCGCCCATTAACGACTTGAGCTTCCGGATTATTTCCAGGT 62872547 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| || || || | ||||| || || || | || ||||| | || | | Sbjct 62872546 TGGTTTTAATAGGGAAATCCATACCGCAAAGGTTGATCAAGTACTTCCAGTCCGCGTTCA 62872487 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 ||| || |||| | ||||| || |||||||| || ||||||||||| || || | Sbjct 62872486 TCTTGTAGAGGTCCTTCATGCAGTTGAGGTCGGCCTGAACCCGACTCCACGAGGCATAGA 62872427 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || |||||| | | |||| || ||||| || |||||| || | | ||||| | Sbjct 62872426 CCACAGTCTCCAGCTGACTGGCCACGAAGACGTTACTGAAACAGGACGCCAGGCCCATGA 62872367 Query 162836 CGGCCAGTGAGAACATCGGGTCCGCT---TTCCTATCTACGTGTACGCAGTATAGATTCT 162892 | | ||| |||| | | ||| || || | || ||||| | ||| || | ||||| Sbjct 62872366 CCG-CAGCTAGAAAA--GATTCCTCTGACTTTTTGTCCACGTGAATGCAATAGAAATTCT 62872310 Query 162893 GAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGA 162952 |||| |||||||||||||| | || || | ||| || || || || || ||||| | Sbjct 62872309 GAGGCATGTAGATGGCCCTCAAGAGCCTGTCAAGCATTTCGATTTTGTGATGAACCACAA 62872250 Query 162953 TAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 ||||||| |||||||| |||| ||||| || Sbjct 62872249 TAGAATAAGCTATGGGATACTCCGCCTCTTC 62872219 >seq14 Length=163896628 Score = 197 bits (218), Expect = 2e-45 Identities = 219/292 (75%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || |||||||| || ||||| | || Sbjct 106903679 CATAGAGAGTGAGGCAGGATGTTCCTGAGATCTTCCCAGACCCAAAGGTGTTAAAGAGAC 106903738 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 ||||| |||| || || ||||||| ||| || ||||| || || | || || || || Sbjct 106903739 ACATATAACACCCCTCATCCTCCAGGGTCGTATTCCAGAAGGTGATGGTGGAGTTCTGGA 106903798 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | |||||| || || || || || | Sbjct 106903799 GTCCCAGCTGGGTGATGTTTAACTTGTCCTTGTAGGCAGGCTGCACCACCACCCCATGGT 106903858 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 ||| |||||| ||| |||| ||||| |||||| |||||| | |||||||| || || | Sbjct 106903859 TCTTGCTGAAGGTGACCATATTTTCTGGGCTCACAGCCTTCTTTTTCTGCCATGTCACAA 106903918 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTT 172062 ||| ||||| | | | ||| ||||||||| |||||| |||||||||||| Sbjct 106903919 CTAAGACTTCCTGGGAAGATTGCAGAGAGCATTTTAAAGTAGCAGGTGTGTT 106903970 Score = 125 bits (138), Expect = 8e-24 Identities = 175/245 (71%), Gaps = 3/245 (1%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| |||| ||| | || | |||| ||| | || | ||| |||||||||| | Sbjct 106900896 GTTTGCCTGAAGTCCATCACTTTTCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 106900952 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | || || ||||| || || || | ||| || ||||| || |||||||| Sbjct 106900953 CCCACCTGAGTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACAGACGTGGTCCCGTTG 106901012 Query 171626 CGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATA 171685 ||||| | | | |||||| || || || ||||| || ||||| ||||| | || Sbjct 106901013 GGATGTGACAGACTCTCAGTACTGTTCTCAATCCCGGACCCAGCAACCTTCCAGGAGATC 106901072 Query 171686 ACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCA 171745 ||||| ||||| | ||||| ||||||||||| || |||| ||||| ||||| | Sbjct 106901073 ACAGGGGCTGGCCGGGCAGTGGCAGAGCAAGTGATATTTAGGTGGTCTTCAAAGAATTTG 106901132 Query 171746 TAGTG 171750 ||||| Sbjct 106901133 TAGTG 106901137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578408566273600