Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7 122 2e-22 seq13 113 1e-19 seq19 107 5e-18 seq2 91.5 3e-13 >seq7 Length=173684459 Score = 122 bits (134), Expect = 2e-22 Identities = 153/206 (74%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||| | | ||||| | || || ||| || || ||| | ||| Sbjct 2561303 AAAACCCTTACGGGAAGACC-ATCACGCTCGAGGTTGAACCCTCGGATACAATAGAAAAT 2561245 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || || || || ||||||||| || || |||||||| || || Sbjct 2561244 GTAAAAGCCAAA-ATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTT 2561186 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||| ||||||||||| ||||||| | || |||||| | || || ||||| Sbjct 2561185 TGCTGGCAAGCAACTGGAAGATGGATGGACTTTATCTGACTACAACATTCAAAAGGAGTC 2561126 Query 206364 TACTCTTCACCTTGTTTTGAGACTTC 206389 ||||||||||||||| |||||||||| Sbjct 2561125 TACTCTTCACCTTGTGTTGAGACTTC 2561100 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204753 GAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCC 204812 |||||||||| |||||||||||||||||||| || || | || ||||||| ||||||| Sbjct 2561100 GAAGTCTCAACACAAGGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTCC 2561159 Query 204813 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || || || || | ||| ||| Sbjct 2561160 ATCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA 2561203 >seq13 Length=143360832 Score = 113 bits (124), Expect = 1e-19 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGC 206306 ||||||||| || || || || ||||||||| || || |||||||| || || || Sbjct 88038956 AAAGCAAAA-ATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATTTTTGC 88039014 Query 206307 CGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTAC 206366 || ||||| ||||||||||| ||||||| | || |||||| | || || |||||||| Sbjct 88039015 TGGCAAGCAACTGGAAGATGGACGGACTTTATCTGACTACAACATTCAAAAGGAGTCTAC 88039074 Query 206367 TCTTCACCTTGTTTTGAGACTTCG 206390 || ||||||||| |||||| |||| Sbjct 88039075 TCCTCACCTTGTGTTGAGATTTCG 88039098 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||| |||||| ||||||||| |||||||||| || || | || ||||||| |||||| Sbjct 88039098 CGAAATCTCAACACAAGGTGAGGAGTAGACTCCTTTTGAATGTTGTAGTCAGATAAAGTC 88039039 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || || || || | ||| ||| Sbjct 88039038 CGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGA 88038994 >seq19 Length=57279966 Score = 107 bits (118), Expect = 5e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || |||||| |||| ||||| |||||| |||| Sbjct 4088043 AAGACCCTCACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 4088102 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || |||||| Sbjct 4088103 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTCATCTTC 4088162 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 4088163 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 4088222 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4088223 ACCCTGCACCTGGT 4088236 Score = 100 bits (110), Expect = 7e-16 Identities = 105/137 (77%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || || || || ||||||||| || || |||||||| ||||| || || ||| Sbjct 43334422 AAAATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTTGCTGGCAAG 43334481 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| |||||| | || |||||| | || || |||| |||||||||| Sbjct 43334482 CAACTGGAAGATGGACAGACTTTATCTGACTACAACATTCAAAAGGAGT-TACTCTTCAC 43334540 Query 206374 CTTGTTTTGAGACTTCG 206390 ||||| ||||||| ||| Sbjct 43334541 CTTGTGTTGAGACCTCG 43334557 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| ||||| |||| Sbjct 4087815 AAGACCCTGACCGGCAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACCATCGAGAAT 4087874 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || |||||| Sbjct 4087875 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTCATCTTC 4087934 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 4087935 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 4087994 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4087995 ACCCTGCACCTGGT 4088008 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| |||||| |||| Sbjct 4088499 AAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 4088558 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || |||||| Sbjct 4088559 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTC 4088618 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 4088619 GCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 4088678 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 4088679 ACCCTGCATCTGGT 4088692 Score = 91.5 bits (100), Expect = 3e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||| ||||||| ||||||||||||||| |||| || || | || ||||||| |||||| Sbjct 43334557 CGAGGTCTCAACACAAGGTGAAGAGTA-ACTCCTTTTGAATGTTGTAGTCAGATAAAGTC 43334499 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 43334498 TGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 43334454 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| ||||| |||| Sbjct 4088271 AAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGCGACACCATCGAGAAT 4088330 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 4088331 GTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTT 4088390 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 4088391 GCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 4088450 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4088451 ACCCTGCACCTGGT 4088464 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 4088008 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4087949 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||||||||| |||| Sbjct 4087948 AGCTGCTTGCCGGCGAAGATGAGCC 4087924 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 4088236 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4088177 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| ||||||||||| |||| Sbjct 4088176 AGCTGCTTGCCGGCGAAGATGAGCC 4088152 >seq2 Length=174332312 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || || || |||||||| || ||| Sbjct 24775598 AAGATCCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTCGCTGGCAAG 24775657 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | || |||||| |||||||||||||||| | ||| Sbjct 24775658 CAGCTGGAAGATGGCCGTACTCTTTCTGACTACAACATCCAGAAAGAGTCTACCTTGCAC 24775717 Query 206374 CTTGT 206378 ||||| Sbjct 24775718 CTTGT 24775722 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| | |||||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 24775722 ACAAGGTGCAAGGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCC 24775663 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || |||||||| |||| Sbjct 24775662 AGCTGCTTGCCAGCGAAGATGAGCC 24775638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181771724521961