Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1 107 6e-20 seq7 104 7e-19 seq71 98.7 3e-17 seq15 98.7 3e-17 seq12 98.7 3e-17 seq8 98.7 3e-17 seq13 87.8 6e-14 seq188 86.0 2e-13 seq16 80.6 8e-12 >seq1 Length=194850757 Score = 107 bits (118), Expect = 6e-20 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 192356020 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 192355961 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 192355960 CCGGGTTTCAGC 192355949 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 192364283 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 192364224 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 192364223 CCGGGTTTCGGC 192364212 >seq7 Length=173684459 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||| ||||||||| |||||||||||||||||||||||||||||| | | Sbjct 165838088 GCTGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 165838029 Query 2829 CCGGGCTTCAGC 2840 ||||| |||||| Sbjct 165838028 CCGGGTTTCAGC 165838017 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| | |||||||||||||||||||||| |||||||| |||| | |||||||||| Sbjct 102747235 TGGCTGAAATTGCTCAGTTGGGAGAGCATTAGATTGAAGATCCAAAGTTACCTGGTTCAA 102747176 Query 2827 CCCCGGGCTTCAGC 2840 ||| || |||||| Sbjct 102747175 TCCCAGGTTTCAGC 102747162 >seq71 Length=2041368 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 594086 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 594145 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 594146 CCGGGTTTCGGC 594157 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 594284 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 594343 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 594344 CCGGGTTTCGGC 594355 >seq15 Length=109054052 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 99847248 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 99847189 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 99847188 CCGGGTTTCGGC 99847177 >seq12 Length=155355395 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10183973 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10184032 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10184033 CCGGGTTTCGGC 10184044 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10282908 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10282967 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10282968 CCGGGTTTCGGC 10282979 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 10311359 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 10311418 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 10311419 CCGGGTTTCGGC 10311430 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| | |||||||||||||||||||||||||||||||| || || Sbjct 101933798 AAATAGCTCAGTTGGGAGAACGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATCCTGG 101933857 Query 2833 GCTTCAGC 2840 | |||||| Sbjct 101933858 GTTTCAGC 101933865 >seq8 Length=111795807 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 96489828 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 96489769 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 96489768 CCGGGTTTCGGC 96489757 >seq13 Length=143360832 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 81718597 GCCGAAATAGCTCAGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTTGATC 81718538 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 81718537 CCGGGTTT 81718530 >seq188 Length=611413 Score = 86.0 bits (94), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCC--TGGTTCAA 2826 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||| | Sbjct 81085 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCTGGGTTCGA 81026 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 81025 TCCCGGGTTTCGGC 81012 >seq16 Length=84478945 Score = 80.6 bits (88), Expect = 8e-12 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 || ||| ||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 61931236 GCCGAAATAGCTCAGTCGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGT 61931289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15849038156445