Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Oryctolagus_20cuniculus_20[refseq_20GCF_5F000003625.3_202009-10-20] 3,241 sequences; 2,737,462,810 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq107 351 1e-91 seq14 264 1e-65 seq9 190 2e-43 seq16 132 6e-26 >seq107 Length=1146635 Score = 351 bits (388), Expect = 1e-91 Identities = 562/804 (70%), Gaps = 5/804 (1%) Strand=Plus/Minus Query 146772 CTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAATC 146831 |||||| |||| | |||| || | || || |||| ||| || | | |||||| Sbjct 529599 CTAAACAGCCATCTCCATTTTAATAGTTGGATGTGGGTTGTACCCTTTCATCTGAAAATC 529540 Query 146832 TTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGGG 146891 ||| || ||||||| || || ||| || | || || |||||||| ||||| || Sbjct 529539 TTCAGCTTTGAAATCATCAATCGTCTCAACTTTTCG-AAGATTTTGAGCTTCGGGAAAGG 529481 Query 146892 TCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 146949 || || | || || |||||| ||||||| ||||| | |||||| ||||| | || Sbjct 529480 TCTTGGTT--CTCGCTGAAGCTGAGTTTTCAGAGGCTCAATGTGGTTCAGGTAAATATGG 529423 Query 146950 GCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATG 147009 || || |||| || || ||||| || || ||||| |||||||| || || | | |||| Sbjct 529422 GCATCTCCCAAAGTATGTACAAAATCACCTGGCTTCAGGCCGGTGACATGCACGATCATG 529363 Query 147010 TAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGAC 147069 |||||||||| | |||||||| ||||||||||| || ||||||| |||||| |||||| Sbjct 529362 TAGGTGAGCAAGGCATAGCTGGCGATGTTGAAGGGCACGCCCAGGCTCATGTCTCCCGAC 529303 Query 147070 CTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGG 147129 || |||||||||||||| || |||||||| | ||||||| |||||||| ||| ||| Sbjct 529302 CTTTGGTACAGCTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGGCAGAGGGCATGG 529243 Query 147130 CACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTCCAGGCCGAGACCACCAGCCGC 147189 || || ||||||||||| || ||||| ||| || ||||| | | | | | Sbjct 529242 CATGGGGGCAGCGCCATCAGAGGAAGGTCTTTGGGATTTCAGGCACACATGATGATTCTT 529183 Query 147190 CTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCACCTCAGCTGGTCCACGCCCTGG 147249 ||| || ||||| | || || ||||| || | ||| ||||| || || || Sbjct 529182 CTGTCATCAGGGTTGGTTTTGATGGTATCGATCACTTTCTGCAGTTGGTCTACTCCTTGA 529123 Query 147250 CCCCCGTAGTTTGTCCCGCAGTCCACGTACCTGGCCCCAAAGTGCCTCCACTGGAAGCCG 147309 || || | || | || ||| || ||||| ||||||||||||||||| Sbjct 529122 CCTGAATAATCTGAGTCCTTATCTTTGTATTCTGCACCAAAATGCCTCCACTGGAAGCCA 529063 Query 147310 TACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAAGCCCGCCCGCTTGAGAAACTCG 147369 || ||||| |||||||| || | |||| ||||| ||| | | | ||| || Sbjct 529062 TAAACTGGACCCAGGTCCCCTTCTTGTCTGGTGGAGAATCCCAGTCTGTCCAAAAAGTCT 529003 Query 147370 GGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTG 147429 |||| | | ||| |||||||| ||||||||||| || || || |||| | ||| Sbjct 529002 CGGGATGCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGTTCTTTAGCATTTGTG 528943 Query 147430 GAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTG 147489 || ||| ||| ||||| |||| ||||||||| || ||| |||| || || | ||||| Sbjct 528942 GATCCCTTGATAAACCACAGCAACTCCTCCAAGACACCCTTCCAGAATACACGTTTGGTT 528883 Query 147490 GTCAGCAGGGGGAACTGGTCCCTCAGCGAATACCTCGCCTGGTCCCCAAACACAGACAGC 147549 |||||||| || || | || ||||| || | | |||| || ||||| ||||| Sbjct 528882 GTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCACACCTGCATGCCGAACACCGACAGG 528823 Query 147550 GTGCCCGTGCCCGTCCTGTCCTCC 147573 ||||| |||||||| | ||||||| Sbjct 528822 GTGCCGGTGCCCGTGCGGTCCTCC 528799 >seq14 Length=163896628 Score = 264 bits (292), Expect = 1e-65 Identities = 250/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||||||||| | |||||| ||||| || || | | |||||||| ||| Sbjct 106904000 GTGGTGACCCAGGATGAAAAACAGCTGCTAAACACACCTGCTACTTTAAAATGCTCTCTG 106903941 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || |||| ||||| || | |||| || |||||||||| ||| | | ||||| Sbjct 106903940 CAATCTTCCCAGGAAGTCTTAGTTGTGACATGGCAGAAAAAGAAGGCTGTGAGCCCAGAA 106903881 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 || ||| | || || ||||| |||| ||||||||||| ||||| || || ||||||||| Sbjct 106903880 AATATGGTCACCTTCAGCAAGAACCATGGGGTGGTGGTGCAGCCTGCCTACAAGGACAAG 106903821 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||||||||| |||||||| ||||| |||||||| || |||||||| ||| | Sbjct 106903820 TTAAACATCACCCAGCTGGGACTCCAGAACTCCACCATCACCTTCTGGAATACGACCCTG 106903761 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||||||| || | || |||||||||||||||||||||||||| ||||| || Sbjct 106903760 GAGGATGAGGGGTGTTATATGTGTCTCTTTAACACCTTTGGGTCTGGGAAGATCTCAGGA 106903701 Query 171372 GTGGCCTGCCTCACCCTCT 171390 |||||||||| |||| Sbjct 106903700 ACATCCTGCCTCACTCTCT 106903682 Score = 194 bits (214), Expect = 2e-44 Identities = 209/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || | || || || ||||| ||||| |||||||| || ||||| || Sbjct 106901158 GTACAGCCCATAGTATCCCTTCACTACAAATTCTTTGAAGACCACCTAAATATCACTTGC 106901099 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| |||||| || | ||| ||| | |||||| || | ||||| | ||||| Sbjct 106901098 TCTGCCACTGCCCGGCCAGCCCCTGTGATCTCCTGGAAGGTTGCTGGGTCCGGGATTGAG 106901039 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| ||| ||| || ||| | || || || || ||||| ||||| || ||||| Sbjct 106901038 AACAGTACTGAGAGTCTGTCACATCCCAACGGGACCACGTCTGTCACCAGCGTCCTCCAT 106900979 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||||||||||| |||| |||| |||||||| |||||||| ||| |||||||||| Sbjct 106900978 GTCAAAGACCCCAAGACTCAGGTGGGGAAGGAGGTGATCTGCCAGGTGCTGCACCTGGGA 106900919 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 || || | |||| ||| |||| | | ||| |||| Sbjct 106900918 AAAGTGATGGACTTCAGGCAAACCATGAACAAAGGTA 106900882 >seq9 Length=116251907 Score = 190 bits (210), Expect = 2e-43 Identities = 141/165 (85%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| |||||||| ||||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 61685969 CTTCAGGCCGGTGACGTGCGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 61686028 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||||||||||||||||||| || |||||||| | Sbjct 61686029 GGGCACGCCCAGGCCCATGTCTCCCGACCTCTGGTACAGCTGGCAGGACAGCTCCCCATT 61686088 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| |||||||| ||||||||||| Sbjct 61686089 CACCACGTAGAACTGGCAGAGGGCATGGCACGGGGGCAGCGCCAT 61686133 Score = 134 bits (148), Expect = 2e-26 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||||| | |||| || | ||||| | ||||||| || | |||||||| Sbjct 14443970 GTACTCCCTGGTGTTTGTCATTGGCCTGGTCGGCAACGTCCTGGTGGTCTTGGTCCTCAT 14443911 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 || ||||||||||| ||| |||||||| ||||| ||| ||||||||||| || || Sbjct 14443910 GAAATACAAGAGGCTGCGGAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCCGA 14443851 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 ||| || | | ||||| || ||||| ||||| ||| || || || | || Sbjct 14443850 CCTCCTCTTCCTCTTCACGCTGCCCTTCTGGATCGACTACC------GGCTAAAGGATGA 14443797 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | || | | | |||| ||||| | || || | |||| | |||| Sbjct 14443796 CTGGGTCTTCGGCGATGTCCTGTGCAAGTTCCTCTCCGGGCTGTATTACGTCGGCTTGTA 14443737 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| ||| | || ||||||||| | || | |||||||| || || | ||| |||| Sbjct 14443736 CAGCGAGGTCTTCTTCATCATCCTGCTCACCATCGACAGGTACCTGGCCATCGTGCACGC 14443677 Query 8910 GGTG 8913 ||| Sbjct 14443676 CGTG 14443673 Score = 86.0 bits (94), Expect = 7e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||| | ||| ||||||||| ||| ||||||||||||||||||| Sbjct 14443254 TGGACCTGGCCATACAAGTGACGGAGGTGATCGCCTACACTCACTGCTGCGTCAACCCCG 14443195 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 | ||||||| ||||| || || | |||||| || |||| Sbjct 14443194 TGATCTACGTCTTTGTTGGGGAGAGGTTCCAGAAGTACCT 14443155 Score = 86.0 bits (94), Expect = 7e-12 Identities = 217/323 (67%), Gaps = 9/323 (3%) Strand=Plus/Plus Query 9112 CTGCCTTTGCTTATCATGGCCTTCTGCTACTGGAAAATCATCAAGGTCCTCCTCAAGGCC 9171 |||||| |||| |||||| || |||||||| ||||||||| || |||| | | Sbjct 14491861 CTGCCTCTGCTCATCATGACCATCTGCTACACCGGAATCATCAAAACGCTGCTCAGGTGC 14491920 Query 9172 CACAACAGGTCGAGAAACCTGCACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTAT 9231 | ||||| | | || | ||| || ||||||||| |||| ||||| | | | Sbjct 14491921 CCCAACAAAACAAAGTACA---AAGCCATCCGGCTCATTTTTGTCATCATGGTGGTCTTT 14491977 Query 9232 TTTGTCTTTTGGATCCCCTACAACGTCCTGCTCATTTTACACACCTACCAAGAGGCCATT 9291 || | || ||| || |||||| | | || || | | | |||| | | | Sbjct 14491978 TTCATTTTCTGGGCACCTTACAACCTGGTTCTTTTTCTTTCTGCTTTTCAAGCGATCTTC 14492037 Query 9292 TTTGGGC-CAGACTGTGAAGCGCGGC--GCAGGGTGGACATGGCCCTCTTGGTGGCTGAG 9348 | | | ||| |||||| | || || |||| ||||| ||||| |||| | ||| Sbjct 14492038 CTGGAGAGCAG-CTGTGA-GAGCAGCAAGCAGT-TGGACCTGGCCAGGCAGGTGACAGAG 14492094 Query 9349 ATGATCGCCTGCACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAG 9408 ||||| || |||||||||||||||||||||| ||||||| || || || ||||| || Sbjct 14492095 GTGATCACCCACACCCACTGCTGCGTCAACCCCATCATCTATGCCTTCGTAGGCGAGAAA 14492154 Query 9409 TTCCAACAGAACCTTCAGGACTT 9431 ||||| || |||| || |||| Sbjct 14492155 TTCCAGAAGTACCTGCACCACTT 14492177 >seq16 Length=84478945 Score = 132 bits (146), Expect = 6e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||| ||||| |||||||| |||||||| ||||||||| || |||| |||| Sbjct 65584575 AGGGTTACCTGGGATGCCAAGCCTTGTCGGAGATGATCCAGTTTTACCTGAAGGACGTGA 65584634 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| ||||| || | ||| | |||||| || |||| Sbjct 65584635 TGCCGCAAGCTGAGAACCACAGT------------CCAGCCATCAGGGAGCACGTGAACT 65584682 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | ||||||||||| || |||||||| || |||||||||| | |||| Sbjct 65584683 CCCTGGGGGAAAACCTGAAGACCCTCAGGCTGAGGCTGCGACAATGT 65584729 Score = 82.4 bits (90), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | || || |||||||| |||||||||||||| || || || ||||||| Sbjct 65586745 AGCTGCAAGAGGAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 65586804 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 65586805 TAGAAACCTACATGACAA 65586822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583464361442400